Data from: Putative causes and consequences of MHC variation within and between locally adapted stickleback demes

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title ind_seqs
Downloaded 103 times
Description Individual sequence data. Columns include the code used to define individuals in the datasets (Ind), the MHC sequence identifier (Seq.ID) and the GenBank accession numbers of the respective sequences (Accession).
Download ind_seqs.csv (10.98 Kb)
Download README.txt (511 bytes)
Details View File Details
Title parasites
Downloaded 72 times
Description Parasite data. Ind denontes the individual identifier. Deme and Pop denote the deme and site of origin, respectively, of each individual. SL denotes standard length, in mm, from snout to caudal peduncle. Wt denotes weight, in grams, and k denotes Fulton's condition factor. Parasite taxa follow: larval digeneans (Blk.Spt), gill copepods (Gill.Cop), monogenean (Monogen) and digenean (Digen) trematodes, nematodes (Nem), acanthocephalans (Acanth), cestodes (Cest), plerocercoids (Pler). Total parasite infection of each individual are described via the Shannon-Wiener diversity index (H) and total parasite load (Load). No.AA denotes the number of unique MHC peptides, inferred from sequence data. AA.Dist denotes the average intra-individual protein distance.
Download parasites.csv (6.91 Kb)
Download README.txt (200 bytes)
Details View File Details
Title mating
Downloaded 68 times
Description Mate-choice data. The Male and Female columns contain identifiers for individuals used in the trials. Pairing denotes whether a potential couple in a given trial belong to the same or different demes. Rep.Suc denotes which male mated with the female in a given trial, and Suc.Mate denotes whether the successful male was from the same deme as the female. M.Pop and F.Pop denote the site of origin of the male and female, respectively. Env denotes the salinity of the test environment. M.Env and F.Env denote whether the test environment was representative of the native salinity of the male and female, respectively. TL and SL denote total and standard length, in mm, of each meal. Wt denotes the weight, in grams, of each male; whereas k denotes condition factor. M.AA and F.AA denote the number of unique MHC peptides for each male and female, respectively. Shared.AA denotes the number of MHC peptides in common between a potential couple in a given trial. M.Uniq.AA denotes the number of MHC peptides a male posses which differ from the female in a given trial. Comb.AA denotes the total number of unique MHC peptides between a male and female in a given trial. M.AA.Dist denotes the average intra-individual protein distance of each male. Pair.AA.Dist denotes the average pair-wise protein distance between a potential couple in a given trial.
Download mating.csv (7.202 Kb)
Download README.txt (258 bytes)
Details View File Details

When using this data, please cite the original publication:

McCairns RJS, Bourget S, Bernatchez L (2010) Putative causes and consequences of MHC variation within and between locally adapted stickleback demes. Molecular Ecology 20(3): 486-502. http://dx.doi.org/10.1111/j.1365-294X.2010.04950.x

Additionally, please cite the Dryad data package:

McCairns RJS, Bourget S, Bernatchez L (2010) Data from: Putative causes and consequences of MHC variation within and between locally adapted stickleback demes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7926
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: