Data from: Expression and phylogenetic analyses reveal paralogous lineages of putatively classical and non-classical MHC-I genes in three sparrow species (Passer)

Drews A, Strandh M, Råberg L, Westerdahl H

Date Published: June 21, 2017

DOI: http://dx.doi.org/10.5061/dryad.79t4b

 

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Title Pado_Primercomb1_rawdata
Downloaded 8 times
Description Raw (unfiltered) 454 amplicon sequence data for house sparrows using primer combination 1. Demultiplexed using the software jMHC (2011).
Download Pado_Primercomb1_rawdata.txt (565.5 Kb)
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Title Pahi_Primercomb1_rawdata
Downloaded 4 times
Description Raw (unfiltered) 454 amplicon sequence data for Spanish sparrow using primer combination 1. Demultiplexed using the software jMHC (2011).
Download Pahi_Primercomb1_rawdata.txt (469.7 Kb)
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Title Pamo_Primercomb1_rawdata
Downloaded 4 times
Description Raw (unfiltered) 454 amplicon sequence data for tree sparrow using primer combination 1. Demultiplexed using the software jMHC (2011).
Download Pamo_Primercomb1_rawdata.txt (577.3 Kb)
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Title Pado_Primercomb2_rawdata
Downloaded 5 times
Description Raw (unfiltered) 454 amplicon sequence data for house sparrow using primer combination 2. Demultiplexed using the software jMHC (2011).
Download Pado_Primercomb2_rawdata.txt (555.9 Kb)
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Title Pahi_Primercomb2_rawdata
Downloaded 3 times
Description Raw (unfiltered) 454 amplicon sequence data for Spanish sparrow using primer combination 2. Demultiplexed using the software jMHC (2011).
Download Pahi_Primercomb2_rawdata.txt (492.9 Kb)
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Title Pamo_Primercomb2_rawdata
Downloaded 4 times
Description Raw (unfiltered) 454 amplicon sequence data for tree sparrow using primer combination 2. Demultiplexed using the software jMHC (2011).
Download Pamo_Primercomb2_rawdata.txt (437.4 Kb)
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Title Pado_primercomb_3_rawdata
Downloaded 3 times
Description Raw (unfiltered) 454 amplicon sequence data for house sparrow using primer combination 3. Demultiplexed using the software jMHC (2011).
Download Pado_primercomb_3_rawdata.txt (267.9 Kb)
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Title Pahi_primer_comb_3_rawdata
Downloaded 2 times
Description Raw (unfiltered) 454 amplicon sequence data for Spanish sparrow using primer combination 3. Demultiplexed using the software jMHC (2011).
Download Pahi_primer_comb_3_rawdata.txt (269.7 Kb)
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Title Pamo_primercomb_3_rawdata
Downloaded 3 times
Description Raw (unfiltered) 454 amplicon sequence data for house sparrow using primer combination 3. Demultiplexed using the software jMHC (2011).
Download Pamo_primercomb_3_rawdata.txt (281.4 Kb)
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Title Pado_Primercomb4_rawdata
Downloaded 4 times
Description Raw (unfiltered) 454 amplicon sequence data for house sparrow using primer combination 4. Demultiplexed using the software jMHC (2011).
Download Pado_Primercomb4_rawdata.txt (310.0 Kb)
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Title Pahi_Primercomb4_rawdata
Downloaded 4 times
Description Raw (unfiltered) 454 amplicon sequence data for Spanish sparrow using primer combination 4. Demultiplexed using the software jMHC (2011).
Download Pahi_Primercomb4_rawdata.txt (309.5 Kb)
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Title Pamo_Primercomb4_rawdata
Downloaded 3 times
Description Raw (unfiltered) 454 amplicon sequence data for tree sparrow using primer combination 4. Demultiplexed using the software jMHC (2011).
Download Pamo_Primercomb4_rawdata.txt (241.7 Kb)
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Title Name_code
Downloaded 3 times
Description Details of the samples included in the study. The column "Name in publication" indicates the name a samples has been given in the published article. The column "Name in 454 files" indicates the corresponding sample in the raw data files.
Download Name_code.txt (659 bytes)
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Title Passer_concate_all_seq
Downloaded 4 times
Description Alignment of the 129 concatenated exon 3 alleles identified. Alignment performed manually using BioEdit V.7.2.5 Sequence Alignment Editor (Hall 1999). In FASTA format.
Download Passer_concate_all_seq.fas (34.03 Kb)
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Title Tree_alignment
Downloaded 3 times
Description Alignment of all alleles identified with primer combination 1 and used for building the phylogenetic tree.
Download Tree_alignment.fas (19.85 Kb)
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When using this data, please cite the original publication:

Drews A, Strandh M, Råberg L, Westerdahl H (2017) Expression and phylogenetic analyses reveal paralogous lineages of putatively classical and non-classical MHC-I genes in three sparrow species (Passer). BMC Evolutionary Biology 17: 152. http://dx.doi.org/10.1186/s12862-017-0970-7

Additionally, please cite the Dryad data package:

Drews A, Strandh M, Råberg L, Westerdahl H (2017) Data from: Expression and phylogenetic analyses reveal paralogous lineages of putatively classical and non-classical MHC-I genes in three sparrow species (Passer). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.79t4b
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