Data from: Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM

Date Published: April 25, 2014

DOI: http://dx.doi.org/10.5061/dryad.7b37k

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title HITChip microarray data
Downloaded 69 times
Description The file contains phylogenetic microarray signal intensities for 130 intestinal genus-like bacterial groups (≥ 90% sequence similarity in the 16S rRNA gene) derived from the 55 faecal samples analysed during four different diets, for details see Supplementary Figure S1 in the article. The sample ID indicates volunteer number followed by a letter code for dietary regime as well as number of days passed from beginning of the trial. More information about the phylogenetic design of the HITChip can be found at http://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2009.01900.x/full. The data were extracted with using min-max normalisation (Bolstad et al. 2003, Bioinformatics 19:185) and log-transformed.
Download ISMEJ_Salonen_HITChip L2_Dryad.txt (88.68 Kb)
Details View File Details

When using this data, please cite the original publication:

Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM (2014) Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men. The ISME Journal 8: 2218-2230. http://dx.doi.org/10.1038/ismej.2014.63

Additionally, please cite the Dryad data package:

Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM (2014) Data from: Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7b37k
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: