Data from: Landscape effects on gene flow for a climate-sensitive montane species, the American pika

Castillo JA, Epps CW, Davis AR, Cushman SA

Date Published: January 3, 2014

DOI: http://dx.doi.org/10.5061/dryad.7c2n8

 

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Title Castillo et al. CDPOP input files
Downloaded 45 times
Description This Excel workbook contains all the necessary input files to re-run the simulations in CDPOP_v1.2.11. Note, each tab must be saved as a separate .csv in order for the program to run.
Download Castillo_et_al_CDPOP_files.xlsx (77.65 Mb)
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Title Castillo et al. Simulated genetic distance matrices
Downloaded 61 times
Description Genetic distance (principle components analysis) matrices for the simulated genotypes from CDPOP. Each tab represents a different generation (grid#) and MC replicate (mcrun#). Only those individuals included in the analyses are included in the matrix.
Download Castillo_et_al_GD_matrices.xlsx (5.834 Mb)
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Title Castillo et al. Genetic distance matrix for empirical data
Downloaded 19 times
Description Genetic distance (principal components analysis) matrix for empirical data. Row/column names correspond to sample ID and are the same for the XY Coordinates file.
Download Castillo_et_at_GD_matrix_real.csv (192.0 Kb)
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Title Castillo et al. Pika Localities
Downloaded 21 times
Description XY coordinates for sampling localities. Data are in UTM zone 10, NAD83.
Download Castillo_et_al_Pika_Localities.csv (2.659 Kb)
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Title Castillo et al. GIS data
Downloaded 26 times
Description Includes raster dataset for elevation, water, and land cover, as well as descriptions of original data sources and modifications to data.
Download Castillo_et_al_GIS_data.7z (16.98 Mb)
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Title Castillo et al. Pika Genotype File
Downloaded 23 times
Description Raw genotypes for pika fecal samples in Genepop format.
Download Castillo_et_al_Genotypes_GenepopFile (17.12 Kb)
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When using this data, please cite the original publication:

Castillo JA, Epps CW, Davis AR, Cushman SA (2014) Landscape effects on gene flow for a climate-sensitive montane species, the American pika. Molecular Ecology 23(4): 843–856. http://dx.doi.org/10.1111/mec.12650

Additionally, please cite the Dryad data package:

Castillo JA, Epps CW, Davis AR, Cushman SA (2014) Data from: Landscape effects on gene flow for a climate-sensitive montane species, the American pika. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7c2n8
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