Data from: Effects of beneficial mutations in pykF gene vary over time and across replicate populations in a long-term experiment with bacteria

Peng F, Widmann S, Wunsche A, Duan K, Donovan KA, Dobson RCJ, Lenski RE, Cooper TF

Date Published: November 8, 2017

DOI: https://doi.org/10.5061/dryad.7ck38

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Title PykF fitness effects: ancestor and 20K
Downloaded 1 time
Description Colony counts of competitions measuring the effect of pykF mutations in the ancestral strain (REL606) and in the 20,000 generation evolved strains each mutation was found in.
Download pykF_anc-20k_data.txt (11.73 Kb)
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Title PykF fitness analysis: ancestor and 20K
Description R script to analyze and plot pykF fitness effects in ancestor and 20,000 generation evolved strains
Download pykF_anc-ev_epistasis.R (15.79 Kb)
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Title PykF allele transfer fitness effects
Downloaded 1 time
Description Results of fitness competitions measuring the effect of pykF alleles transferred across different 20,000 generation evolved strains.
Download pykF_ev_allele_transfer.txt (9.296 Kb)
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Title pykF allele transfer analysis
Downloaded 3 times
Description R script to analyze and plot fitness of pykF mutations across different 20,000 generation evolved strains
Download pykF_ev_allele_transfer.R (5.974 Kb)
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Title PykF time-series fitness effects
Downloaded 1 time
Description Results of competitions to measure the effect of six of the evolved pykF mutations at up to six time points along their evolutionary trajectory
Download pykF_time_series_data.txt (7.968 Kb)
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Title PykF time-series analysis
Downloaded 2 times
Description R script analyzing and plotting effect of pykF mutations at steps along evolutionary trajectories
Download pykF_time_series_epistasis.R (12.11 Kb)
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When using this data, please cite the original publication:

Peng F, Widmann S, Wünsche A, Duan K, Donovan KA, Dobson RCJ, Lenski RE, Cooper TF (2017) Effects of beneficial mutations in pykF gene vary over time and across replicate populations in a long-term experiment with bacteria. Molecular Biology and Evolution, online in advance of print. https://doi.org/10.1093/molbev/msx279

Additionally, please cite the Dryad data package:

Peng F, Widmann S, Wunsche A, Duan K, Donovan KA, Dobson RCJ, Lenski RE, Cooper TF (2017) Data from: Effects of beneficial mutations in pykF gene vary over time and across replicate populations in a long-term experiment with bacteria. Dryad Digital Repository. https://doi.org/10.5061/dryad.7ck38
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