Data from: Dealing with uncertainty in landscape genetic resistance models: a case of three co-occurring marsupials

Dudaniec RY, Worthington-Wilmer J, Hanson JO, Warren M, Bell S, Rhodes JR

Date Published: January 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.7cs0p.2

 

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Title P_norf_coords
Downloaded 14 times
Description Sample coordinates for P. norfolcensis in latitude and longitude
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Title Roussets_matrix_P. brev
Downloaded 8 times
Description Genetic distance matrix for P. breviceps (Roussets' a)
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Title Roussets_matrix_P.norf
Downloaded 17 times
Description Genetic distance matrix for P. norfolcensis (Rousset's a)
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Title A.flav_GenepopInput
Downloaded 16 times
Description Microsatellite datafile in genepop format - A.flavipes
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Title P.brev_GenepopInput
Downloaded 10 times
Description Microsatellite datafile in genepop format - P.breviceps
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Title P.norf_GenepopInput
Downloaded 9 times
Description Microsatellite datafile in genepop format - P.norfolcensis
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Title makeFPCrasters
Downloaded 7 times
Description R code to make raster files for %FPC for resistance calculation
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Title makeFPCLCrasters
Downloaded 6 times
Description R code to make rasterfiles for %FPC+LC for resistance modeling
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Title A.flav_coords
Downloaded 8 times
Description Sample geographic coordinates for A. flavipes
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Title Pbrev_coords
Downloaded 12 times
Description Sample geographic coordinates for P. breviceps
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Title A.flav_sample_data
Downloaded 5 times
Description Sample and site information including morphological measurements, sampling date and sex for A. flavipes.
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Title P.brev_sample_data
Downloaded 7 times
Description Sample and site information including morphological measurements, sampling date and sex for P. breviceps.
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Title P.norf_sample_data
Downloaded 5 times
Description Sample and site information including morphological measurements, sampling date and sex for P. norfolcensis.
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Title Roussets_matrix_A.flav
Downloaded 9 times
Description Roussets a genetic distance matrix for A. flavipes
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Title A.flav_microsatData
Downloaded 8 times
Description Microsatellite dataset for A. flavipes
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Title P. norfolcensis_microsatData
Downloaded 9 times
Description Microsatellite dataset for P. norfolcensis
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Title P.brev_microsatData
Downloaded 10 times
Description Microsatellite dataset for P. breviceps
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Title data_set_up
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Description R code for constructing fractal landscapes for the simulations.
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Title functions
Downloaded 15 times
Description R functions for constructing resistance surfaces
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Title grid_search
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Description R Code for conducting the grid search approach for estimating resistance parameters
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Title optim_search
Downloaded 7 times
Description R code for conducting the optimisation search method for estimating landscape resistance parameters.
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Title simulation_script
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When using this data, please cite the original publication:

Dudaniec RY, Worthington-Wilmer J, Hanson JO, Warren M, Bell S, Rhodes JR (2015) Dealing with uncertainty in landscape genetic resistance models: a case of three co-occurring marsupials.Molecular Ecology, 25(2):470–486 http://dx.doi.org/10.1111/mec.13482

Additionally, please cite the Dryad data package:

Dudaniec RY, Worthington-Wilmer J, Hanson JO, Warren M, Bell S, Rhodes JR (2015) Data from: Dealing with uncertainty in landscape genetic resistance models: a case of three co-occurring marsupials. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7cs0p.2
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