Data from: Canine mammary tumours are affected by frequent copy number aberrations, including amplification of MYC and loss of PTEN

Borge KS, Nord S, Van Loo P, Lingjærde OC, Gunnes G, Alnæs GIG, Solvang HK, Lüders T, Kristensen VN, Børresen-Dale A, Lingaas F

Date Published: July 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.7dm4d

 

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Title ReadMe
Description File containing detailed information about the different data files in this submission.
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Title Tumor_BAF_117orig
Description Original B allele frequency values for the 117 tumour samples studied.
Download Tumor_BAF_117orig.txt (142.0 Mb)
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Title Tumor_LogR_117orig
Description Original Log R Ratio values for the 117 tumour samples studied.
Download Tumor_LogR_117orig.txt (219.9 Mb)
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Title Tumor_LogR.GCadjusted_qnorm_117
Description Adjusted Log R Ratio values for the 117 tumour samples studied, after the application of the GC correction method and quantile normalization.
Download Tumor_LogR.GCadjusted_qnorm_117.txt (153.0 Mb)
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Title Germline_BAF_117
Description B allele frequency values for the blood samples for each of the 71 dogs in the study.
Download Germline_BAF_117.txt (135.5 Mb)
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Title Germline_LogR_117
Description Log R Ratio values for the blood samples for each of the 71 dogs in the study.
Download Germline_LogR_117.txt (225.2 Mb)
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Title Diagnoses and histopathologic scores_ASCAT tumours
Description Histopathomorphological diagnoses and histopathologic score values for all tumours that achieced an ASCAT output (113 of 117 tumours). These diagnoses/scores were used in further analysis of the ASCAT output.
Download Diagnoses and histopathologic scores_ASCA...rs.txt (6.85 Kb)
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When using this data, please cite the original publication:

Borge KS, Nord S, Van Loo P, Lingjærde OC, Gunnes G, Alnæs GIG, Solvang HK, Lüders T, Kristensen VN, Børresen-Dale A, Lingaas F (2015) Canine mammary tumours are affected by frequent copy number aberrations, including amplification of MYC and loss of PTEN. PLOS ONE 10(5): e0126371. http://dx.doi.org/10.1371/journal.pone.0126371

Additionally, please cite the Dryad data package:

Borge KS, Nord S, Van Loo P, Lingjærde OC, Gunnes G, Alnæs GIG, Solvang HK, Lüders T, Kristensen VN, Børresen-Dale A, Lingaas F (2015) Data from: Canine mammary tumours are affected by frequent copy number aberrations, including amplification of MYC and loss of PTEN. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7dm4d
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