Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices

Congreve CR, Lamsdell JC

Date Published: March 11, 2016

DOI: http://dx.doi.org/10.5061/dryad.7dq0j

 

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Title Appendix S1 - TNT files
Downloaded 24 times
Description Zip file containing all 100 matrices generated from our MK model of morphological change.
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Title Appendix S2 – Trees
Downloaded 17 times
Description Zip file containing pdfs of all consensus trees generated from equal and implied weighting analyses for all 100 matrices. The files have been commented on to denote correct and incorrect node relationships with checks and x's respectively.
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Title Appendix S3 - Spreadsheet of Node Counts
Downloaded 14 times
Description Excel spreadsheet with raw counts of correct, incorrect, and unknown relationships for all runs of equal and implied weighting, as well standardized counts of implied weighting relative to equal weighting, and overall counts of the relative proportions of the data which increase or decrease error.
Download S3 - Spreadsheet of Node Counts.xlsx (62.08 Kb)
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Title Appendix S4 – Run Counts of Repeated Errors
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Description A checklist of the 100 runs counting off the number of times an error in equal weighting was repeated in 1, 2, 3, and all 4 implied weights runs.
Download S4 - Run Counts of repeated errors.xlsx (10.28 Kb)
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Title Appendix S5 - Character Weights Test NEXUS files
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Description Zip folder containing all 100 nexus files used in the character weights tests. These matrices contain the same 4 characters (Character 56-59), generated with known rates of evolution.
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Title Appendix S6 - Character Weights
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Description Excel spreadsheet of the weights/fits generated for our four characters in all 100 matrices for four values of k (1,3,5,10).
Download S6 - Character Weights.xlsx (23.54 Kb)
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When using this data, please cite the original publication:

Congreve CR, Lamsdell JC (2016) Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Palaeontology 59(3): 447–462. http://dx.doi.org/10.1111/pala.12236

Additionally, please cite the Dryad data package:

Congreve CR, Lamsdell JC (2016) Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7dq0j
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