Data from: Evolutionary analysis of Old World arenaviruses reveals a major adaptive contribution of the viral polymerase

Pontremoli C, Forni D, Cagliani R, Pozzoli U, Riva S, Bravo IG, Clerici M, Sironi M

Date Published: August 1, 2017

DOI: http://dx.doi.org/10.5061/dryad.7g877

 

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Title GPC alignment for evolutionary analyses
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Title NP alignment for evolutionary analyses.
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Title L alignment for evolutionary analyses.
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Title GPC, NP and L trees for evolutionary analyses.
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Title Lassa virus Nigerian GPC strains used for gammaMap analyses.
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Download GPC_gamma_Nigeria.fa (163.3 Kb)
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Title Lassa virus Non Nigerian GPC strains used for gammaMap analyses.
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Title GPC outgroup used for gammaMap analyses.
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Download GPC_outgroup.fa (1.525 Kb)
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Title Lassa virus Nigerian NP strains used for gammaMap analyses.
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Download NP_gamma_Nigeria.fa (189.8 Kb)
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Title Lassa virus Non Nigerian NP strains used for gammaMap analyses.
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Title NP outgroup used for gammaMap analyses.
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Title Lassa virus Nigerian L strains used for gammaMap analyses.
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Download L_gamma_Nigeria.fa (671.0 Kb)
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Title Lassa virus Non Nigerian L strains used for gammaMap analyses.
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Download L_gamma_OutNigeria.fa (438.3 Kb)
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Title L outgroup used for gammaMap analyses.
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Download L_outgroup.fa (6.73 Kb)
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Title GPC sequences used for CAI analyses.
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Download GPCcai.fasta (414.1 Kb)
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Title NP sequences used for CAI analyses.
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Download NPcai.fasta (468.8 Kb)
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Title L sequences used for CAI analyses.
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Title Lassa virus GPC strains isolated from rodents used for gammaMap analyses.
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Download GPC_gamma_rodents.fa (34.48 Kb)
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Title Lassa virus L strains isolated from rodents used for gammaMap analyses.
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Title Lassa virus NP strains isolated from rodents used for gammaMap analyses.
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When using this data, please cite the original publication:

Pontremoli C, Forni D, Cagliani R, Pozzoli U, Riva S, Bravo IG, Clerici M, Sironi M (2017) Evolutionary analysis of Old World arenaviruses reveals a major adaptive contribution of the viral polymerase. Molecular Ecology, online in advance of print. http://dx.doi.org/10.1111/mec.14282

Additionally, please cite the Dryad data package:

Pontremoli C, Forni D, Cagliani R, Pozzoli U, Riva S, Bravo IG, Clerici M, Sironi M (2017) Data from: Evolutionary analysis of Old World arenaviruses reveals a major adaptive contribution of the viral polymerase. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7g877
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