Data from: Phylogenomic analysis of yellowjackets and hornets (Hymenoptera: Vespidae, Vespinae)

Lopez-Osorio F, Pickett KM, Carpenter JM, Ballif BA, Agnarsson I

Date Published: November 1, 2016

DOI: http://dx.doi.org/10.5061/dryad.7h0g0

 

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Title Transcriptome assemblies (nucleotide)
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Description Transcriptomes assembled using paired-end Illumina reads and 454 GS-FLX Titanium reads. Assemblies were conducted using Trinity and MIRA.
Download transcriptome_assemblies_nucleotide.zip (285.6 Mb)
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Title Candidate coding regions (ORFs) identified within transcript sequences (nucleotide and peptide sequences)
Downloaded 7 times
Description Candidate coding regions identified with TransDecoder.
Download transcriptome_assemblies_orfs.zip (109.3 Mb)
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Title Non-redundant candidate coding regions (peptide sequences)
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Description Protein sequences used for orthology inference.
Download transcriptome_assemblies_orfs_nr_cdhit.zip (25.12 Mb)
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Title Sets of inferred orthologs
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Description We inferred orthologs using the pipeline of Yang and Smith (2014, http://mbe.oxfordjournals.org/content/31/11/3081), aligned sequences using MAFFT, and trimmed alignments using Gblocks.
Download orthologs.zip (9.902 Mb)
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Title Concatenated orthologs used for phylogenetic analysis
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Description Matrices of concatenated orthologs in PHYLIP format and partition files used for phylogenetic analysis with RAxML.
Download concatenated_data_matrices.zip (14.84 Mb)
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When using this data, please cite the original publication:

Lopez-Osorio F, Pickett KM, Carpenter JM, Ballif BA, Agnarsson I (2016) Phylogenomic analysis of yellowjackets and hornets (Hymenoptera: Vespidae, Vespinae). Molecular Phylogenetics and Evolution 107: 10-15. http://dx.doi.org/10.1016/j.ympev.2016.10.006

Additionally, please cite the Dryad data package:

Lopez-Osorio F, Pickett KM, Carpenter JM, Ballif BA, Agnarsson I (2016) Data from: Phylogenomic analysis of yellowjackets and hornets (Hymenoptera: Vespidae, Vespinae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7h0g0
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