Data from: Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food

Chen AJ, Hubka V, Frisvad JC, Visagie CM, Houbraken J, Meijer M, Varga J, Demirel R, Jurjević Ž, Kubátová A, Sklenář F, Zhou YG, Samson RA

Date Published: July 17, 2017

DOI: https://doi.org/10.5061/dryad.7hn1j

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Title Combined alignment: benA caM RPB2
Downloaded 9 times
Description Combined dataset of BenA, CaM and RPB2 sequences for 164 taxa belonging to section Aspergillus (formerly Eurotium). Hamigera avellanea NRRL 1938T represents an outgroup. BenA: positions 1-408; CaM: positions 409-1124; RPB2: positions 1125-2093
Download benA caM RPB2.fas (358.3 Kb)
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Title Phylogeny of sect. Aspergillus inferred from combined data: BenA, CaM, RPB2
Downloaded 24 times
Description A 50% majority rule Maximum likelihood consensus tree based on combined dataset of BenA, CaM and RPB2 sequences showing the relationship of species within Aspergillus sect. Aspergillus. Dataset contained 164 taxa. Maximum likelihood bootstrap proportion (bs) and Bayesian posterior probability (pp) are appended to nodes; only bs ≥ 70 % and pp ≥ 95% are shown, lower supports are indicated with a hyphen, whereas asterisks indicate full support (100% bs or 1.00 pp); ex-type strains are designated by a superscript T. The tree is rooted with Hamigera avellanea NRRL 1938T.
Download Fig 1 Eurotium combined phylogeny.pdf (34.22 Kb)
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Title β-tubulin (BenA) alignment
Downloaded 6 times
Description Alignment: β-tubulin (BenA) sequences for 164 taxa belonging to section Aspergillus (formerly Eurotium). Hamigera avellanea NRRL 1938T represents an outgroup.
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Title Aspergillus sect. Aspergillus: Tree based on benA
Downloaded 15 times
Description A 50% majority rule Maximum likelihood consensus tree based on partial β-tubulin (BenA) sequences showing the relationship of species within Aspergillus sect. Aspergillus. Maximum likelihood bootstrap proportion (bs) and Bayesian posterior probability (pp) are appended to nodes; only bs ≥ 70 % and pp ≥ 95% are shown, lower supports are indicated with a hyphen, whereas asterisks indicate full support (100% bs or 1.00 pp); ex-type strains are designated by a superscript T. The tree is rooted with Hamigera avellanea NRRL 1938T.
Download Fig 2 Eurotium Tree benA.pdf (30.37 Kb)
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Title Calmodulin (caM) alignment
Downloaded 8 times
Description Alignment: calmodulin (caM) sequences for 164 taxa belonging to section Aspergillus (formerly Eurotium). Hamigera avellanea NRRL 1938T represents an outgroup.
Download caM.fas (124.9 Kb)
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Title Aspergillus sect. Aspergillus: Tree based on CaM
Downloaded 21 times
Description A 50% majority rule Maximum likelihood consensus tree based on partial calmodulin (CaM) sequences showing the relationship of species within Aspergillus sect. Aspergillus. Maximum likelihood bootstrap proportion (bs) and Bayesian posterior probability (pp) are appended to nodes; only bs ≥ 70 % and pp ≥ 95% are shown, lower supports are indicated with a hyphen, whereas asterisks indicate full support (100% bs or 1.00 pp); ex-type strains are designated by a superscript T. The tree is rooted with Hamigera avellanea NRRL 1938T.
Download Fig 3 Eurotium Tree CaM.pdf (31.44 Kb)
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Title RPB2 alignment
Downloaded 7 times
Description Alignment: RNA polymerase II second largest subunit (RPB2) sequences for 164 taxa belonging to section Aspergillus (formerly Eurotium). Hamigera avellanea NRRL 1938T represents an outgroup.
Download RPB2.fasta (168.0 Kb)
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Title Aspergillus sect. Aspergillus: Tree based on RPB2
Downloaded 19 times
Description A 50% majority rule Maximum likelihood consensus tree based on partial RNA polymerase II second largest subunit (RPB2) sequences showing the relationship of species within Aspergillus sect. Aspergillus. Maximum likelihood bootstrap proportion (bs) and Bayesian posterior probability (pp) are appended to nodes; only bs ≥ 70 % and pp ≥ 95% are shown, lower supports are indicated with a hyphen, whereas asterisks indicate full support (100% bs or 1.00 pp); ex-type strains are designated by a superscript T. The tree is rooted with Hamigera avellanea NRRL 1938T.
Download Fig 4 Eurotium Tree RPB2.pdf (30.96 Kb)
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Title ITS rDNA alignmet
Downloaded 4 times
Description Alignment: RNA polymerase II second largest subunit (RPB2) sequences for 164 taxa belonging to section Aspergillus (formerly Eurotium). Hamigera avellanea NRRL 1938T represents an outgroup.
Download ITS.fas (94.75 Kb)
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Title Aspergillus sect. Aspergillus: Tree based on ITS rDNA
Downloaded 17 times
Description A 50% majority rule Maximum likelihood consensus tree based on ITS rDNA sequences. Maximum likelihood bootstrap proportion (bs) and Bayesian posterior probability (pp) are appended to nodes; only bs ≥ 70 % and pp ≥ 95% are shown, lower supports are indicated with a hyphen, whereas asterisks indicate full support (100% bs or 1.00 pp); ex-type strains are designated by a superscript T. The tree is rooted with Hamigera avellanea NRRL 1938T.
Download Fig 5 Eurotium Tree ITS.pdf (12.90 Kb)
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When using this data, please cite the original publication:

Chen A, Hubka V, Frisvad J, Visagie C, Houbraken J, Meijer M, Varga J, Demirel R, Jurjević Ž, Kubátová A, Sklenář F, Zhou Y, Samson R (2017) Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food. Studies in Mycology 88: 37-135. https://doi.org/10.1016/j.simyco.2017.07.001

Additionally, please cite the Dryad data package:

Chen AJ, Hubka V, Frisvad JC, Visagie CM, Houbraken J, Meijer M, Varga J, Demirel R, Jurjević Ž, Kubátová A, Sklenář F, Zhou YG, Samson RA (2017) Data from: Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food. Dryad Digital Repository. https://doi.org/10.5061/dryad.7hn1j
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