Data from: Genome-wide association study of meat quality traits in a White Duroc × Erhualian F2 intercross and Chinese Sutai pigs

 

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Title Porcine 60K SNP genotypes for F2 and Sutai pigs
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Description Dataset corresponds to the article: "Genome-wide Association Study of Meat Quality Traits in a White Duroc × Erhualian F2 intercross and Chinese Sutai Pigs" Junwu Ma, Lusheng Huang. For any correspondnce, please address Lusheng Huang (lushenghuang@hotmail.com). The tarred file "Porcine 60K SNP genotype of F2 and Sutai pigs.zip" contains 3 PLINK format files (.map and .ped). The first file "SNP60K_positions.map" gives the positions of 62163 SNPs (from the Illumina's Porcine SNP60 Beadchips) according to the Sscrofa10.2 assembly.The second file "F2_genotypes.ped" contains these SNPs genotypes for 939 F2 individuals derived from the White Duroc×Erhualian (WE) resource population. The third file "Sutai_genotypes.ped" contains these SNPs genotypes for 434 Sutai pigs.
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When using this data, please cite the original publication:

Ma J, Yang J, Zhou L, Ma H, Xie X, Zhang F, Xiong X, Cui L, Duan Y, Xiao S, Ai H, Ren J, Huang L (2013) Genome-wide association study of meat quality traits in a White Duroc × Erhualian F2 intercross and Chinese Sutai pigs. PLoS ONE 8(5): e64047. http://dx.doi.org/10.1371/journal.pone.0064047

Additionally, please cite the Dryad data package:

Ma J, Yang J, Zhou L, Ma H, Xie X, Zhang F, Xiong X, Cui L, Duan Y, Xiao S, Ai H, Ren J, Huang L (2013) Data from: Genome-wide association study of meat quality traits in a White Duroc × Erhualian F2 intercross and Chinese Sutai pigs. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7kn7r
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