Data from: A genes eye view of ontogeny: De novo assembly and profiling of the Gryllus rubens transcriptome

Berdan EL, Blankers T, Waurick I, Mazzoni CJ, Mayer F

Date Published: April 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.7n10n

 

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Title Rubens_transcriptome_annotated
Downloaded 19 times
Description Output of transcriptome annotation from Blast2Go
Download Rubens_transcriptome_annotated.xlsx (3.367 Mb)
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Title filter_transcripts
Downloaded 10 times
Description python script for filtering initial transcriptome assembly
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Title Filtered transcriptome
Downloaded 5 times
Description This transcriptome has been filtered to contain only contigs with FPKM value of 0.5 or greater and a minimum contig length of 600 bp. Additionly we retained only isoforms that accounted for 51% or more of the expression of a gene.
Download tr2.fpkm0.5_l600_uniq.fa (66.47 Mb)
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Title Unfiltered transcriptome
Downloaded 9 times
Description raw trinity output without filtering.
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Title Rubens_RSEM_output
Downloaded 6 times
Description RSEM output for all pools.
Download Rubens_RSEM_output.zip (2.978 Mb)
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When using this data, please cite the original publication:

Berdan EL, Blankers T, Waurick I, Mazzoni CJ, Mayer F (2016) A genes eye view of ontogeny: De novo assembly and profiling of the Gryllus rubens transcriptome. Molecular Ecology Resources 16(6): 1478–1490. http://dx.doi.org/10.1111/1755-0998.12530

Additionally, please cite the Dryad data package:

Berdan EL, Blankers T, Waurick I, Mazzoni CJ, Mayer F (2016) Data from: A genes eye view of ontogeny: De novo assembly and profiling of the Gryllus rubens transcriptome. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7n10n
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