Data from: Social and spatial effects on genetic variation between foraging flocks in a wild bird population

Radersma R, Garroway CJ, Santure AW, De Cauwer I, Farine DR, Slate J, Sheldon BC

Date Published: July 27, 2017

DOI: http://dx.doi.org/10.5061/dryad.7n731

 

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Title Individual genotypes (SNP-markers)
Downloaded 5 times
Description Genotypes (SNPs markers) of all individuals in this study. Columns are SNP markers and rows are individuals. This matrix contains a header with SNP-marker names. Identities of the individuals can be found in the "list of individuals in the genotype matrix".
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Title List of individuals in the genotype matrix
Downloaded 3 times
Description List of the identities of all individuals in the "individual genotypes" matrix. Each entry corresponds to a row in the "individual genotypes" matrix.
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Title List of candidate genes
Downloaded 5 times
Description List of candidate genes. This file contains a header. marker_name corresponds to the marker identities (columns) in the " individual genotypes" matrix. gene_cat are the categories investigated in this study. candidate_gene are the corresponding gene names.
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Title Individual by gathering event matrix 2007
Downloaded 5 times
Description This matrix indicates which individuals were present at which gathering events. Columns are gathering events, rows are individuals. Gathering events are ordered by time and date (from early to late). Presence at a gathering event is marked with a 1. The identities of the individuals can be found in the "list of individuals for the I by GE matrix 2007". The locations of the gathering events can be found in the "list of locations of the gathering events 2007".
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Title List of individuals for the I by GE matrix 2007
Downloaded 3 times
Description List of the identities of the individuals in the "individual by gathering event matrix 2007". Each entry corresponds to a row in the "individual by gathering event matrix 2007".
Download list_of_individuals_2007.csv (7.561 Kb)
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Title List of locations of the gathering events 2007
Downloaded 3 times
Description List of the locations of all gathering events in 2007. Each entry corresponds to a column in the "individual by gathering event matrix 2007". The values correspond to the rows and columns in the "spatial distance matrix" and the rows in the "eigen vectors of the spatial weighting matrix".
Download list_of_locations_of_gathering_events_2007.csv (90.27 Kb)
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Title Individual by gathering event matrix 2008
Downloaded 3 times
Description This matrix indicates which individuals were present at which gathering events. Columns are gathering events, rows are individuals. Gathering events are ordered by time and date (from early to late). Presence at a gathering event is marked with a 1. The identities of the individuals can be found in the "list of individuals for the I by GE matrix 2008". The locations of the gathering events can be found in the "list of locations of the gathering events 2008".
Download individual_by_gathering_event_2008.csv (38.55 Mb)
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Title List of individuals for the I by GE matrix 2008
Downloaded 3 times
Description List of the identities of the individuals in the "individual by gathering event matrix 2008". Each entry corresponds to a row in the "individual by gathering event matrix 2008".
Download list_of_individuals_2008.csv (7.27 Kb)
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Title List of locations of the gathering events 2008
Downloaded 3 times
Description List of the locations of all gathering events in 2008. Each entry corresponds to a column in the "individual by gathering event matrix 2008". The values correspond to the rows and columns in the "spatial distance matrix" and the rows in the "eigen vectors of the spatial weighting matrix".
Download list_of_locations_of_gathering_events_2008.csv (75.55 Kb)
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Title Individual by gathering event matrix 2009
Downloaded 3 times
Description This matrix indicates which individuals were present at which gathering events. Columns are gathering events, rows are individuals. Gathering events are ordered by time and date (from early to late). Presence at a gathering event is marked with a 1. The identities of the individuals can be found in the "list of individuals for the I by GE matrix 2009". The locations of the gathering events can be found in the "list of locations of the gathering events 2009".
Download individual_by_gathering_event_2009.csv (10.03 Mb)
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Title List of individuals for the I by GE matrix 2009
Downloaded 3 times
Description List of the identities of the individuals in the "individual by gathering event matrix 2009". Each entry corresponds to a row in the "individual by gathering event matrix 2009".
Download list_of_individuals_2009.csv (7.431 Kb)
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Title List of locations of the gathering events 2009
Downloaded 2 times
Description List of the locations of all gathering events in 2009. Each entry corresponds to a column in the "individual by gathering event matrix 2009". The values correspond to the rows and columns in the "spatial distance matrix" and the rows in the "eigen vectors of the spatial weighting matrix".
Download list_of_locations_of_gathering_events_2009.csv (19.00 Kb)
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Title Spatial distance matrix
Downloaded 3 times
Description The spatial distances between all feeding stations (in meters). Rows and columns correspond to the locations of the feeding stations, i.e. the values in the "list of locations of gathering events 2007/2008/2009" files.
Download spatial_distance_matrix.csv (59.89 Kb)
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Title Distance based Moran's Eigenvector Maps
Downloaded 4 times
Description The distance based Moran's Eigenvector Maps (db-MEMs) for all feeding stations. Rows correspond to the feeding station locations and columns to the 20 Eigenvectors.
Download spatial_weighting_matrix_Eigen_vectors.csv (20.88 Kb)
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Title Asymmetric Eigenvector Maps 2007
Downloaded 6 times
Description The Asymmetric Eigenvector Maps for the gathering events in 2007. Rows correspond to the gathering events and columns to the first 500 Eigenvectors.
Download asymmetric_eigenvector_maps_2007.csv.zip (137.6 Mb)
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Title Asymmetric Eigenvector Maps 2008
Downloaded 9 times
Description The Asymmetric Eigenvector Maps for the gathering events in 2008. Rows correspond to the gathering events and columns to the first 500 Eigenvectors.
Download asymmetric_eigenvector_maps_2008.csv.zip (115.0 Mb)
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Title Asymmetric Eigenvector Maps 2009
Downloaded 5 times
Description The Asymmetric Eigenvector Maps for the gathering events in 2009. Rows correspond to the gathering events and columns to the first 500 Eigenvectors.
Download asymmetric_eigenvector_maps_2009.csv.zip (29.28 Mb)
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When using this data, please cite the original publication:

Radersma R, Garroway CJ, Santure AW, De Cauwer I, Farine DR, Slate J, Sheldon BC (2017) Social and spatial effects on genetic variation between foraging flocks in a wild bird population. Molecular Ecology, online in advance of print. http://dx.doi.org/10.1111/mec.14291

Additionally, please cite the Dryad data package:

Radersma R, Garroway CJ, Santure AW, De Cauwer I, Farine DR, Slate J, Sheldon BC (2017) Data from: Social and spatial effects on genetic variation between foraging flocks in a wild bird population. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7n731
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