Data from: Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers

Scott AD, Stenz NWM, Ingvarsson PK, Baum DA

Date Published: March 25, 2016

DOI: http://dx.doi.org/10.5061/dryad.7nb70

 

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Title Single-copy analyses
Downloaded 13 times
Description This file contains filtered transcriptome assemblies for S. sempervirens, S. giganteum, M. glyptostroboides, and T. occidentalis. These files serve as input for our concordance analysis pipleline located at https://github.com/nstenz/toca
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Download README.txt (966 bytes)
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Title Multi-copy analyses
Downloaded 13 times
Description This directory contains .fasta alignments and PAML (codeml) outputs. Files are split between a 2-copy and 3-copy directory based on the number of putative homeologous sequences in hexaploid S. sempervirens.
Download Multi-copy analyses.zip (1.325 Mb)
Download README.txt (851 bytes)
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Title Transcriptome assemblies
Downloaded 11 times
Description Trinity assemblies for four taxa, both with and without EviGene filtering
Download transcriptomes.zip (153.5 Mb)
Download README.txt (1.016 Kb)
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When using this data, please cite the original publication:

Scott AD, Stenz NWM, Ingvarsson PK, Baum DA (2016) Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers. New Phytologist 211(1): 186–193. http://dx.doi.org/10.1111/nph.13930

Additionally, please cite the Dryad data package:

Scott AD, Stenz NWM, Ingvarsson PK, Baum DA (2016) Data from: Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7nb70
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