Data from: Ecological divergence, adaptive diversification, and the evolution of social signaling traits: an empirical study in arid Australian lizards

Edwards DL, Melville J, Joseph L, Keogh JS

Date Published: July 13, 2015

DOI: http://dx.doi.org/10.5061/dryad.7nm09

 

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Title Environmental_data
Description Environmental data taken using spatial information collected from specimens examined for genetic and morphological analysis. Sampled data are from GIS layers, including Bioclim, the Australian soil database, a worldwide DEM and satellite imagery.
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Title Extent_4_SDM
Description Spatial extents used to clip GIS layers for each species
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Title Genetic_Data
Description Genetic data used for species tree estimation (6 genes - focal group only) and ND2 rate of substitution estimation (Agamidae). Files are in nexus format and contain genbank accession numbers.
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Title MDI_plot_function
Description R function written to run MDI analyses incorporating phylogenetic uncertainty. Function will produce plots similar to those that appear in the ms.
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Title Morphology_data
Description Morphological data collected from specimens (both male and female) and organized by category (see ms).
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Title Phylogenetic_Correlation_function
Description R function to perform phylogenetic correlation analyses accounting for phylogenetic uncertainty.
Download Phylogenetic_Correlation_function.r (550 bytes)
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Title SDM_asciis
Description Species distribution map layers (median) for each species generated using MaxEnt.
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Title SDM_thresholds
Description Thresholds (maximum specificity+sensitivity) used for cut-off values for each species SDM when calculating area overlap between species distributions.
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Title Trees
Description Species tree files, including the median species tree used for most analyses and the 1000 trees sampled from the posterior distribution.
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Title TreeCov_data
Description Tree cover data derived from satellite imagery.
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Title Mean_LAI_data
Description Average Leaf Area Index data derived from satellite imagery.
Download Mean_LAI_data.tgz (63.84 Mb)
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Title Mean_NDVI_data
Description Mean NDVI calculated from satellite imagery.
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Title StDev_LAI_data
Description Average yearly standard deviation (i.e., seasonality) of LAI calculated across years from satellite imagery.
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Title StDev_NDVI_data
Description Average yearly standard deviation (i.e., seasonality) of NDVI calculated across years from satellite imagery.
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Title Spatial observed point data
Description Point data used to extract environmental data from observed species localities. Data are largely sourced from OZCAM, with some additional locations confirmed by DL Edwards.
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When using this data, please cite the original publication:

Edwards DL, Melville J, Joseph L, Keogh JS (2015) Ecological divergence, adaptive diversification, and the evolution of social signaling traits: an empirical study in arid Australian lizards. The American Naturalist 186(6): E144-E161. http://dx.doi.org/10.1086/683658

Additionally, please cite the Dryad data package:

Edwards DL, Melville J, Joseph L, Keogh JS (2015) Data from: Ecological divergence, adaptive diversification, and the evolution of social signaling traits: an empirical study in arid Australian lizards. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7nm09
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