Data from: Effects of inversions on within- and between-species recombination and divergence

Stevison LS, Noor MAF, Hoehn KB

Date Published: July 5, 2011

DOI: http://dx.doi.org/10.5061/dryad.7q0nq

 

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Title Scripts
Downloaded 92 times
Description Scripts used to calculate average pairwise differences between all 6 pairwise combinations along the XR chromosome between Drosophila pseudoobscura, Drosophila persimilis, Sex-Ratio Drosophila persimilis, and Drosophila miranda. These output file can then be used to calculate RND between D pseudoobscura, D persimilis, and SR D persimilis in another program such as Microsoft Excel. All scripts are written in Perl. Author: Kenneth Hoehn. Date: May-5-2011. Sections: 1. Constructing the combined, raw input file from PILEUP outputs (skip if combined input file is provided); 2. Necessary input files for final analysis; 3. Editing combined input file and calculating average pairwise differences; 4. Calculating RND; 5. Double checking output; 6. Simple window writing script. See README.txt for more details.
Download README.txt (15.35 Kb)
Download Scripts.zip (11.34 Kb)
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Title Multiple genome alignment of XR
Downloaded 112 times
Description This document contains the multiple genome alignment file associated with this publication. A total of four XR chromosome sequences were used for this study – one D. miranda, one D. pseudoobscura, and two D. persimilis.
Download XR_PsPerMir_combined_g1g2_MSH39.txt (2.757 Gb)
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When using this data, please cite the original publication:

Stevison LS, Hoehn KB, Noor MAF (2011) Effects of inversions on within- and between-species recombination and divergence. Genome Biology and Evolution 3: 830-841. http://dx.doi.org/10.1093/gbe/evr081

Additionally, please cite the Dryad data package:

Stevison LS, Noor MAF, Hoehn KB (2011) Data from: Effects of inversions on within- and between-species recombination and divergence. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7q0nq
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