Data from: The genomic landscape of ribosomal peptides containing thiazole and oxazole heterocycles

Cox CL, Doroghazi JR, Mitchell DA

Date Published: October 15, 2015

DOI: http://dx.doi.org/10.5061/dryad.7q830

 

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Title YcaO containing organism 16S alignment
Downloaded 8 times
Description The alignment used to create the trees in Figure 6 and S8. These trees contain the 16S sequences from all of the organisms containing a YcaO domain protein used in the study.
Download 141119-16sMafftOut.meg (8.860 Mb)
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Title 16S maximum likelihood tree from TOMM producers
Downloaded 5 times
Description A maximum likelihood tree made with the 16S sequences from all organisms that contain a YcaO domain containing protein. This tree was used in Figure 6 and S8, but colored differently in the paper depending on TOMM produced
Download 141218-16s-knowns-maximum.nwk (63.12 Kb)
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Title YcaO containing protein alignment
Downloaded 6 times
Description An alignment of all YcaO containing (D) proteins that were used in the analysis. This alignment was used to generate Figures S3 and S4
Download 141219-DOnlyTreeMuscle.meg (3.108 Mb)
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Title Maximum likelihood tree with YcaO containing protiens
Downloaded 5 times
Description This is a Maximum likelihood tree with all the YcaO domain containing (D) proteins used in this study. This tree was used to create Figures S3 and S4, but colored differently depending on the TOMM created.
Download 141230-AllDMaximum-knowns.nwk (63.81 Kb)
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When using this data, please cite the original publication:

Cox CL, Doroghazi JR, Mitchell DA (2015) The genomic landscape of ribosomal peptides containing thiazole and oxazole heterocycles. BMC Genomics 16: 778. http://dx.doi.org/10.1186/s12864-015-2008-0

Additionally, please cite the Dryad data package:

Cox CL, Doroghazi JR, Mitchell DA (2015) Data from: The genomic landscape of ribosomal peptides containing thiazole and oxazole heterocycles. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7q830
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