Data from: Reed frog diversification in the Gulf of Guinea: overseas dispersal, the progression rule, and in situ speciation

Bell RC, Drewes RC, Zamudio KR

Date Published: January 14, 2015

DOI: http://dx.doi.org/10.5061/dryad.7s7s7

 

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Title Structure Main Data File
Downloaded 20 times
Description This text file contains SNP data at 3644 loci for 78 samples of Hyperolius molleri and H. thomensis from São Tomé and Príncipe. The dataset includes only the first SNP from loci that are present in at least 75% of individuals in each of the three lineages (H. molleri Príncipe, H. molleri São Tomé, H. thomensis São Tomé). The first row of the file is the locus name, which corresponds to the locus ID in the catalog of loci generated by STACKS. Missing data indicated by “0".
Download Islands_3644SNPs.txt (1.162 Mb)
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Title SNAPP Input File
Downloaded 24 times
Description This xml file contains SNP data at 467 loci for 5 samples of Hyperolius molleri from São Tomé, 5 samples of H. molleri from Príncipe, 5 H. thomensis from São Tomé, and 6 samples of the out group H. cinnamomeoventris from Gabon. The dataset includes biallelic SNPs present in at least two individuals in each of the four lineages. Homozygous positions indicated by 0 or 2, heterozygous positions indicated by 1, missing data indicated by “-“.
Download IslandsOutGroup_467SNPs.xml (19.72 Kb)
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Title NewHybrids Input File
Downloaded 29 times
Description This text file contains SNP data for 61 samples of Hyperolius molleri and H. thomensis from São Tomé. The complete set of 3644 SNPs used in the STRUCTURE analysis was pruned to only include SNPs with a minor allele frequency > 0.2 (386 SNPs). The fifth row of the file is the locus name, which corresponds to the locus ID in the catalog of loci generated by STACKS. Samples with assignment probabilities > 0.99 to either the H. molleri or H. thomensis deme in the STRUCTURE analysis are designated as “parental” genotypes with either the z0 or z1 flags. Missing data indicated by “00".
Download SaoTomeHybrids_386SNPs.txt (74.51 Kb)
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When using this data, please cite the original publication:

Bell RC, Drewes RC, Zamudio KR (2015) Reed frog diversification in the Gulf of Guinea: overseas dispersal, the progression rule, and in situ speciation. Evolution 69(4): 904–915. http://dx.doi.org/10.1111/evo.12623

Additionally, please cite the Dryad data package:

Bell RC, Drewes RC, Zamudio KR (2015) Data from: Reed frog diversification in the Gulf of Guinea: overseas dispersal, the progression rule, and in situ speciation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7s7s7
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