Data from: Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa)

Zhou L, Bawa R, Holliday JA

Date Published: April 15, 2014

DOI: http://dx.doi.org/10.5061/dryad.7sb0f

 

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Title migrate_input_file
Downloaded 12 times
Description Input file for intergenic regions Migrate analysis described in the paper.
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Title SRA058855
Description Raw Illumina HiSeq data used for all empirical analyses described in the paper.
Download ../sra/?term=SRA058855 (0 bytes)
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Title FASTA_alignments
Downloaded 5 times
Description Complete FASTA alignments, one file per genomic regions, for all captured sequences described in the paper. Data are phased using Fastphase as described and provided as two haplotypes per sample (A and B)
Download fasta_files_Ptv2_fasta.tar.gz (89.43 Mb)
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Title bayescan_out_with_annotations
Downloaded 33 times
Description Output of BayeScan analyses described in the paper. One tab for each site type. Poplar gene model and best Arabidopsis hit are given for each site. In the case of promoter regions, these annotations refer to the nearest gene downstream of the site.
Download bayescan_out_with_annotations.xlsx (8.306 Mb)
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When using this data, please cite the original publication:

Zhou L, Bawa R, Holliday JA (2014) Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa). Molecular Ecology 23(10): 2486-2499. http://dx.doi.org/10.1111/mec.12752

Additionally, please cite the Dryad data package:

Zhou L, Bawa R, Holliday JA (2014) Data from: Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7sb0f
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