Data from: "De novo assembled transcriptome of organs involved in reproduction in an endangered endemic Iberian cyprinid fish (Squalius pyrenaicus)" in Genomic Resources Notes Accepted 1 June 2015 to 31 July 2015

Machado MP, Pinho J, Grosso AR, Schartl M, Coelho MM

Date Published: August 17, 2015

DOI: http://dx.doi.org/10.5061/dryad.7sj8s

 

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Title ORFs blast hits (1)
Downloaded 57 times
Description S. pyrenaicus ORFs blastx hits identified against NCBI non-redundant protein database
Download tabela_anotacao_contigs_blast_geneID_1.xlsx (3.097 Mb)
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Title Predicted coding sequences GO annotation (1)
Downloaded 39 times
Description GO terms in DAVID “all” category associated to the CDS dataset
Download tabela_anotacao_go_1.xlsx (1.376 Mb)
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Title Reference transcriptome blast hits
Downloaded 44 times
Description S. pyrenaicus reference transcriptome blastx hits identified against NCBI non-redundant protein database
Download tabela_anotacao_contigs_blast_geneID_trans....xlsx (6.061 Mb)
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Title Reference transcriptome sequences
Downloaded 13 times
Description S. pyrenaicus de novo assembled transcriptome with Trans-ABySS software
Download pp_contigs_nonRedudant.fa.bz2 (38.16 Mb)
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Title ORFs sequences
Downloaded 11 times
Description S. pyrenaicus transcriptome coding sequences (CDS) predicted by TransDecoder software
Download pp_contigs_nonRedudant_transdecoder_cds_n...fa.bz2 (14.02 Mb)
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Álvarez P, Arthofer W, Coelho MM, Conklin D, Estonba A, Grosso AR, Helyar SJ, Langa J, Machado MP, Montes I, Pinho J, Rief A, Schartl M, Schlick-Steiner BC, Seeber J, Steiner FM, Vilas C (2015) Genomics Resources Notes accepted 1 June 2015 - 31 July 2015. Molecular Ecology 15(6): 1510–1512. http://dx.doi.org/10.1111/1755-0998.12454

Additionally, please cite the Dryad data package:

Machado MP, Pinho J, Grosso AR, Schartl M, Coelho MM (2015) Data from: "De novo assembled transcriptome of organs involved in reproduction in an endangered endemic Iberian cyprinid fish (Squalius pyrenaicus)" in Genomic Resources Notes Accepted 1 June 2015 to 31 July 2015. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7sj8s
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