Data from: Characterising a hybrid zone between a cryptic species pair of freshwater snails

Patel S, Schell T, Eifert C, Feldmeyer B, Pfenninger M

Date Published: December 23, 2014

DOI: http://dx.doi.org/10.5061/dryad.7tg41

 

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Title structure_input
Downloaded 13 times
Description This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite markers and 3 coding genes for 409 Radix snails from the core and extended population data sets. This was used as input for the program STRUCTURE.
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Title POPS_input
Downloaded 8 times
Description This is a tab-delimited text file containing environmental data, spatial data and the nuclear marker genotypes at 9 microsatellite markers and 3 coding genes for 316 Radix snails from the core population data set. This file was used as input for the program POPS.
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Title POPS_predictionfile
Downloaded 5 times
Description This file contains climate prediction data for each of the individuals/sample sites in the core population set, in the year 2050. This file was used as input for the POPS prediction utility.
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Title POPS_geo_dist_circle
Downloaded 7 times
Description This is a file containing pairwise distances between each individual/sample site calculated using the greater circles algorithm in POPS.
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Title climate_data
Downloaded 8 times
Description This is the climate data used to construct the PCA axes.
Download climate_data.txt (16.44 Kb)
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Title act1a_aln
Downloaded 7 times
Description This is a fasta file containing aligned Actin-1a (act1a) sequence data from Radix snails.
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Title hasp2_aln
Downloaded 5 times
Description This is a fasta file containing aligned heat shock-related 70 kDa protein 2 (HSPA2) sequence data from Radix snails.
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Title psmd2_aln
Downloaded 4 times
Description This is a fasta file containing aligned 26S proteasome non-ATPase regulatory subunit 2(Psmd2) sequence data from Radix snails.
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Title co1_outgroups_aln
Downloaded 10 times
Description This is a mega file (for use with the program MEGA: http://www.megasoftware.net/) containing aligned cytochrome c oxidase subunit 1 (COI) sequence data from Radix (and other) snails.
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When using this data, please cite the original publication:

Patel S, Schell T, Eifert C, Feldmeyer B, Pfenninger M (2015) Characterising a hybrid zone between a cryptic species pair of freshwater snails. Molecular Ecology 24(3): 643-655. http://dx.doi.org/10.1111/mec.13049

Additionally, please cite the Dryad data package:

Patel S, Schell T, Eifert C, Feldmeyer B, Pfenninger M (2014) Data from: Characterising a hybrid zone between a cryptic species pair of freshwater snails. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7tg41
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