Data from: Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

Thomas L, Kendrick GA, Kennington WJ, Richards ZT, Stat M

Date Published: May 22, 2014

DOI: http://dx.doi.org/10.5061/dryad.7th55

 

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Title OTU sequences 454 data cp23s HVR gene
Downloaded 10 times
Description 33 OTUs identified from samples based on clustering at 97% similarity using average neighbor algorithm in mothur
Download OTU sequences cp23s.fasta (6.704 Kb)
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Title HAI cp23s sanger sequences
Downloaded 4 times
Description Abrolhos Islands sanger sequences cp23s
Download HAI cp23s sanger sequences.fasta (21.58 Kb)
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Title KIM cp23s sanger sequences
Downloaded 3 times
Description Kimberley sanger sequences cp23s
Download KIM sanger sequence cp23s.fasta (26.09 Kb)
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Title OTU sequences 454 data ITS2 gene
Downloaded 5 times
Description 454 data from Acropora clustered into OTUs based on 97% similarity using average neighbour algorithm
Download ITS2 OTU alignment.fasta (7.011 Kb)
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Title 454 sequence data
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Description 454 sequence data of Acropora colonies from Kimberley and Abrolhos
Download 454 data.fasta (47.65 Mb)
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Title R script
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Description figures 2 and 3
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Title OTU distribution for each colony
Downloaded 11 times
Description OTU distribution for each colony
Download colonies.csv (6.37 Kb)
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Title analysis pipeline
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Description steps for analysis pipeline in Mothur
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When using this data, please cite the original publication:

Thomas L, Kendrick GA, Kennington WJ, Richards ZT, Stat M (2014) Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing. Molecular Ecology 23(12): 3113-3126. http://dx.doi.org/10.1111/mec.12801

Additionally, please cite the Dryad data package:

Thomas L, Kendrick GA, Kennington WJ, Richards ZT, Stat M (2014) Data from: Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7th55
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