Data from: Transatlantic secondary contact in Atlantic salmon, comparing microsatellites, a SNP array, and Restriction Associated DNA sequencing for the resolution of complex spatial structure

Bradbury IR, Hamilton LC, Dempson JB, Robertson MJ, Bourret V, Bernatchez L, Verspoor E

Date Published: September 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.7tv21

 

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Title Southern Newfoundland Atlantic Salmon microsatellite data
Downloaded 10 times
Description Atlantic salmon microsatellite data, for 2439 individuals, with an average of 78.7 individuals per population
Download Microsatellite data.csv (314.4 Kb)
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Title Atlantic salmon RAD-seq data VCF format
Downloaded 13 times
Description VCF file for Atlantic salmon RAD-seq data from southern Newfoundland populations
Download 20130820_FOC_Salmon_Bradbury_std.vcf (484.6 Mb)
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Title Distance matrices
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Description Genetic and geographic distance matrices
Download Distance matrices.xls (25.6 Kb)
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Title SNP Array genotype data
Downloaded 12 times
Description SNP array genotypes for 5,568 SNP loci collected with the V2 Atlantic salmon SNP-array developed by the Centre for Integrative Genetics (CIGENE, Norway) using the Illumina infinium assay (Illumina, San Diego, CA, USA) following the manufacturer’s instructions. A total 203 individuals were genotyped from 10 populations, with an average of 20 individuals per population
Download SNP Array genotype data.csv (3.714 Mb)
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When using this data, please cite the original publication:

Bradbury IR, Hamilton LC, Dempson JB, Robertson MJ, Bourret V, Bernatchez L, Verspoor E (2015) Transatlantic secondary contact in Atlantic salmon, comparing microsatellites, a SNP array, and Restriction Associated DNA sequencing for the resolution of complex spatial structure. Molecular Ecology 24(20): 5130–5144. http://dx.doi.org/10.1111/mec.13395

Additionally, please cite the Dryad data package:

Bradbury IR, Hamilton LC, Dempson JB, Robertson MJ, Bourret V, Bernatchez L, Verspoor E (2015) Data from: Transatlantic secondary contact in Atlantic salmon, comparing microsatellites, a SNP array, and Restriction Associated DNA sequencing for the resolution of complex spatial structure. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7tv21
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