Data from: The transcriptional landscape of seasonal coat colour moult in the snowshoe hare

Ferreira MS, Alves PC, Callahan CM, Marques JP, Mills LS, Good JM, Melo-Ferreira J

Date Published: May 9, 2017

DOI: http://dx.doi.org/10.5061/dryad.7v1m1

 

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Title Snowshoe hare skin transcriptome (raw)
Downloaded 7 times
Description This transcriptome was assembled from 15 skin samples, collected from 5 adult snowshoe hares undergoing spring moult. From each of the 5 individuals, we collected 3 skin biopsies in different moult stages and extracted mRNA. We produced strand specific cDNA libraries for each sample that we sequenced. We pooled read data for all samples and assembled this transcriptome using TRINITY.
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Download Lep_ame_raw_skin_transcriptome.Trinity.fasta (327.8 Mb)
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Title Snowshoe hare skin transcriptome (filtered)
Downloaded 8 times
Description This transcriptome was assembled from 15 skin samples, collected from 5 adult snowshoe hares undergoing spring moult. From each of the 5 individuals, we collected 3 skin biopsies in different moult stages and extracted mRNA. We produced strand specific cDNA libraries for each sample that we sequenced. We pooled read data for all samples and assembled this transcriptome using TRINITY. After assembling, we annotated the transcriptome to rabbit and mouse ENSEMBL protein database. Contigs that failed to annotate were removed from the transcriptome, resulting on this filtered version. We used this transcriptome to map reads and estimate expression values for each gene using RSEM.
Download Lep_ame_filtered_skin_transcriptome.fasta (189.6 Mb)
Download README.rtf (1.7 Kb)
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Title Snowshoe hare gene level abundance estimations from RSEM
Downloaded 9 times
Description This tar file contains gene level results for 15 snowshoe hare skin samples. More information in the README file.
Download Lep_ame_RSEM.out.genes.results.tar (88.04 Mb)
Download README.rtf (1.459 Kb)
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Title Snowshoe hare isoform level abundance estimations from RSEM
Downloaded 14 times
Description This tar file contains isoform level results for 15 snowshoe hare skin samples. More information in the README file.
Download Lep_ame_RSEM.out.isoforms.results.tar (172.9 Mb)
Download README.rtf (1.3 Kb)
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When using this data, please cite the original publication:

Ferreira MS, Alves PC, Callahan CM, Marques JP, Mills LS, Good JM, Melo-Ferreira J (2017) The transcriptional landscape of seasonal coat colour moult in the snowshoe hare. Molecular Ecology 26(16): 4173–4185. http://dx.doi.org/10.1111/mec.14177

Additionally, please cite the Dryad data package:

Ferreira MS, Alves PC, Callahan CM, Marques JP, Mills LS, Good JM, Melo-Ferreira J (2017) Data from: The transcriptional landscape of seasonal coat colour moult in the snowshoe hare. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7v1m1
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