Data from: Developmental mechanisms of stripe patterns in rodents

Mallarino R, Henegar C, Mirasierra M, Manceau M, Schradin C, Vallejo M, Beronja S, Barsh GS, Hoekstra HE

Date Published: November 3, 2016

DOI: http://dx.doi.org/10.5061/dryad.7v222

 

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Title De novo assembly of Rhabdomys pumilio transcriptome and detailed differential gene expression results
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Description This dataset contains a fasta file, including the de novo assembly of Rhabdomys pumilio transcriptome (built from RNA-Seq data using the Trinity suite of de novo transcriptome assembly tools - https://github.com/trinityrnaseq/trinityrnaseq/wiki), as well as a tab separated text file indicating the gene annotations corresponding to each assembly contig, obtained by mapping the de novo assembly to the human reference transcriptome, as described in the manuscript. A third Excel file contains the detailed results of RNA-Seq differential gene expression study in skin obtained from three dorsal regions, as described in the manuscript.
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When using this data, please cite the original publication:

Mallarino R, Henegar C, Mirasierra M, Manceau M, Schradin C, Vallejo M, Beronja S, Barsh GS, Hoekstra HE (2016) Developmental mechanisms of stripe patterns in rodents. Nature 539(7630): 518-523. http://dx.doi.org/10.1038/nature20109

Additionally, please cite the Dryad data package:

Mallarino R, Henegar C, Mirasierra M, Manceau M, Schradin C, Vallejo M, Beronja S, Barsh GS, Hoekstra HE (2016) Data from: Developmental mechanisms of stripe patterns in rodents. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7v222
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