Data from: Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens

Hawkins MTR, Leonard JA, Helgen KM, McDonough MM, Rockwood LL, Maldonado JE

Date Published: April 5, 2016

DOI: http://dx.doi.org/10.5061/dryad.7v5p3

 

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Title 157k_362Loci_align_9plus
Downloaded 6 times
Description Nexus file of 362 UCE loci from a minimum of nine individuals, with at least three informative sites. The total alignment is over 157,000 bp.
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Title ML tree of Mitogenomes plus UCE outgroups
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Description Mitochondrial tree, generated through Maximum Likelihood.
Download ML tree of Mitogenomes plus UCE outgroups.newick (102.2 Kb)
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Title Mitogene_Tree_DCSPrior
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Description Mitogenome BEAST xml file from this publication.
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Title FcC_info
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Description FasConCat data partitioning text file.
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Title FcC_supermatrix
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Description FasConCat supermatrix fasta file.
Download FcC_supermatrix.fas (1.731 Mb)
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Title 28ConpleteGeneTrees
Downloaded 9 times
Description Subset of 28 UCE loci from complete data matrix.
Download 28ConpleteGeneTrees.newick (10.40 Kb)
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Title NJst_362LociSpTree
Downloaded 6 times
Description Species tree from NJst.
Download NJst_362LociSpTree.newick (546 bytes)
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Title 157kUCEs
Downloaded 8 times
Description BEAST xml file for 362 UCE loci dataset.
Download 157kUCEs.xml (1.744 Mb)
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Title 157k_38subsets
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Description Zipped folder containing each of the 38 data partitions selected from the k-means algorithm.
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When using this data, please cite the original publication:

Hawkins MTR, Leonard JA, Helgen KM, McDonough MM, Rockwood LL, Maldonado JE (2016) Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens. BMC Evolutionary Biology 16: 80. http://dx.doi.org/10.1186/s12862-016-0650-z

Additionally, please cite the Dryad data package:

Hawkins MTR, Leonard JA, Helgen KM, McDonough MM, Rockwood LL, Maldonado JE (2016) Data from: Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7v5p3
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