Data from: The genetic basis and experimental evolution of inbreeding depression in Caenorhabditis elegans

Chelo IM, Carvalho S, Roque M, Proulx SR, Teotónio H

Date Published: September 17, 2013

DOI: http://dx.doi.org/10.5061/dryad.7vv50

 

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Title Genotype_data
Downloaded 35 times
Description This file contains a table with genotypes of the individuals from populations (inbred and outbred) of generation 0 and 100.
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Title R.Simulation_inbreeding
Downloaded 34 times
Description R script to simulate the haplotypes generated during inbreeding
Download R.Simulation_inbreeding.txt (10.52 Kb)
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Title SNP_info
Downloaded 19 times
Description Table with SNP marker information, used in the simulation of inbreeding.
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Title hap_G0.A.O_IV
Downloaded 28 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population from generation 0.
Download hap_G0.A.O_IV.R (2.708 Kb)
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Title hap_G0.A.O_X
Downloaded 17 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population from generation 0.
Download hap_G0.A.O_X.R (2.439 Kb)
Download README.txt (3.068 Kb)
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Title hap_G0.D.O_IV
Downloaded 14 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population from generation 0.
Download hap_G0.D.O_IV.R (3.649 Kb)
Download README.txt (3.068 Kb)
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Title hap_G0.D.O_X
Downloaded 25 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population from generation 0.
Download hap_G0.D.O_X.R (4.133 Kb)
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Title hap_G100.A1.O_IV
Downloaded 18 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population, replicate nº1, from generation G100.
Download hap_G100.A1.O_IV.R (1.505 Kb)
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Title hap_G100.A1.O_X
Downloaded 20 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population, replicate nº1, from generation G100.
Download hap_G100.A1.O_X.R (1.659 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.A2.O_IV
Downloaded 21 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population, replicate nº2, from generation G100.
Download hap_G100.A2.O_IV.R (2.137 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.A2.O_X
Downloaded 16 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population, replicate nº2, from generation G100.
Download hap_G100.A2.O_X.R (2.285 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.A3.O_IV
Downloaded 19 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population, replicate nº3, from generation G100.
Download hap_G100.A3.O_IV.R (1.843 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.A3.O_X
Downloaded 15 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population, replicate nº3, from generation G100.
Download hap_G100.A3.O_X.R (1.993 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.D1.O_IV
Downloaded 14 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population, replicate nº1, from generation G100.
Download hap_G100.D1.O_IV.R (2.071 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.D1.O_X
Downloaded 17 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population, replicate nº1, from generation G100.
Download hap_G100.D1.O_X.R (2.232 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.D2.O_IV
Downloaded 13 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population, replicate nº2, from generation G100.
Download hap_G100.D2.O_IV.R (2.416 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.D2.O_X
Downloaded 21 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population, replicate nº2, from generation G100.
Download hap_G100.D2.O_X.R (2.434 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.D3.O_IV
Downloaded 18 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population, replicate nº3, from generation G100.
Download hap_G100.D3.O_IV.R (2.36 Kb)
Download README.txt (3.068 Kb)
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Title hap_G100.D3.O_X
Downloaded 22 times
Description Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population, replicate nº3, from generation G100.
Download hap_G100.D3.O_X.R (2.4 Kb)
Download README.txt (3.068 Kb)
Details View File Details

When using this data, please cite the original publication:

Chelo IM, Carvalho S, Roque M, Proulx SR, Teotónio H (2014) The genetic basis and experimental evolution of inbreeding depression in Caenorhabditis elegans. Heredity 112(3): 248-254. http://dx.doi.org/10.1038/hdy.2013.100

Additionally, please cite the Dryad data package:

Chelo IM, Carvalho S, Roque M, Proulx SR, Teotónio H (2013) Data from: The genetic basis and experimental evolution of inbreeding depression in Caenorhabditis elegans. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.7vv50
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