Data from: Insight into genomic changes accompanying divergence: genetic linkage maps and synteny of Lucania goodei and L. parva reveal a Robertsonian fusion

Berdan EL, Kozak GM, Ming R, Rayburn AL, Kiehart R, Fuller RC

Date Published: June 13, 2014

DOI: http://dx.doi.org/10.5061/dryad.80822

 

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Title L.goodei_contigs
Downloaded 42 times
Description This file contains 454 EST sequences that were used as a reference for assembling our new Illumina reads. These EST sequences were created using pooled DNA from several populations. See the ReadMe file for further details. Dassanayake M, Haas JS, Bohnert HJ, Cheeseman JM (2009) Shedding light on an extremophile lifestyle through transcriptomics. New Phytologist 183, 764-775.
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Download 454large300Contigs.fna (14.62 Mb)
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Title L. goodei joinmap file for all families
Downloaded 9 times
Description This excel file contains the joinmap data for all of the families used to resolve the L. goodei linkage map. Each family is listed on a separate excel sheet. The joinmap code for each individual at each SNP marker is listed. The individuals are the progeny of an F2 cross between two L. goodei populations (Upper Bridge River of the Wakulla River and Everglades populations). Also, the segregation type and the phase of each marker is listed. These are joinmap codes.
Download L.goodei-all-famillies-joinmapfile.xlsx (1.022 Mb)
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Title L.parva joinmap file for all families
Downloaded 36 times
Description This excel file contains the joinmap data for all of the families used to resolve the L. parva linkage map. Each F2 family is listed on a separate excel sheet. The joinmap code for each individual at each SNP marker is listed. The individuals are the progeny of an F2 cross between two L. parva populations (Indian River Lagoon, FL and Pecos River, TX populations). Also, the segregation type and the phase of each marker is listed. These are joinmap codes.
Download L.parva-all-families-joinmapfile.xlsx (807.5 Kb)
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When using this data, please cite the original publication:

Berdan EL, Kozak GM, Ming R, Rayburn AL, Kiehart R, Fuller RC (2014) Insight into genomic changes accompanying divergence: genetic linkage maps and synteny of Lucania goodei and L. parva reveal a Robertsonian fusion. G3: Genes - Genomes - Genetics 4(8):1363-72. http://dx.doi.org/10.1534/g3.114.012096

Additionally, please cite the Dryad data package:

Berdan EL, Kozak GM, Ming R, Rayburn AL, Kiehart R, Fuller RC (2014) Data from: Insight into genomic changes accompanying divergence: genetic linkage maps and synteny of Lucania goodei and L. parva reveal a Robertsonian fusion. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.80822
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