Data from: ABC inference of multi-population divergence with admixture from unphased population genomic data

Robinson JD, Bunnefeld L, Hearn J, Stone GN, Hickerson MJ

Date Published: August 7, 2014

DOI: http://dx.doi.org/10.5061/dryad.80m5b

 

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Title Analysis scripts from simulation study
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Description The contents of this zipped file include i) the cross-validation scripts for assessing the model selection performance (modCV scripts), and ii) the PODS analysis scripts for assessing parameter estimation (POD scripts).
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Title Simulation scripts for reference table generation
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Description This zipped archive file contains the 14 R scripts used to simulate data for the simulation study portion of our manuscript. Each script corresponds to one sampling scheme, but all share the same structure and code. The first few lines of the script (ll. 15-17) set the length of loci in the dataset ('size' scripts vary this by scaling theta), the number of individuals sampled ('ind' scripts vary this), and the number of loci sampled ('block' scripts vary this).
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Title Scripts for empirical application to B. pallida data
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Description The R scripts in this file were used to simulate data for the Biorhiza pallida analysis.
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Title Lines used to simulate models in msABC
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Description This text file gives the basic msABC (Pavlidis et al. 2010) lines used to simulate data under the 7 models considered in our study, using parameter/variable names instead of values in the command line code.
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When using this data, please cite the original publication:

Robinson JD, Bunnefeld L, Hearn J, Stone GN, Hickerson MJ (2014) ABC inference of multi-population divergence with admixture from unphased population genomic data. Molecular Ecology 23(18): 4458-4471. http://dx.doi.org/10.1111/mec.12881

Additionally, please cite the Dryad data package:

Robinson JD, Bunnefeld L, Hearn J, Stone GN, Hickerson MJ (2014) Data from: ABC inference of multi-population divergence with admixture from unphased population genomic data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.80m5b
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