Data from: Similar evolutionary potentials in an obligate ant parasite and its two host species

Pennings PS, Achenbach A, Foitzik S

Date Published: January 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.8134.2

 

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Title P.americanusGenepop
Downloaded 10 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download P.ameforGenepop.txt (8.351 Kb)
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Title T.curvispinosusGenepop
Downloaded 6 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download T.curforGenepop.txt (22.30 Kb)
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Title T.longispinosusGenepop
Downloaded 5 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download T.lonforGenepop.txt (17.6 Kb)
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Title T.curvispinosusGeogDistances
Downloaded 2 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download T.curGeogDistances.csv (325 bytes)
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Title T.longispinosusGeogDistances
Downloaded 3 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download T.longGeogDistances.csv (350 bytes)
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Title P.americanusGeogDistances
Downloaded 6 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download P.ameGeogDistances.csv (162 bytes)
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Title T.curvispinosus36SeqsMtDNA
Downloaded 7 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download Curvi_pops_36Seqs.fas (50.45 Kb)
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Title T.longispinosus50SeqsMtDNA
Downloaded 7 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download Tlong50Seqs.fas (68.08 Kb)
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Title P.americanus_78seqsMtDNA
Downloaded 6 times
Description For each species there are three files, one with the geographic distances and one with the microsatellite data in Genepop format and one with the MtDNA sequences. The species are: Protomagnathus americanus, Temnothorax curvispinosus, Temnothorax longispinosus. In the genepop files, the first two letters of the name of the individual indicate where it is from. WV is West-Virginia, MA Massachusets, MD Maryland etc. OH is Ohio1 and O2 is Ohio2.
Download Pam_78seqs.fas (108.1 Kb)
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Title RSamplingLocations
Downloaded 4 times
Description R script to plot the sampling locations
Download RSamplingLocations.r (637 bytes)
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Title LocationsDec
Downloaded 3 times
Description Names and coordinates of the sampling locations
Download LocationsDec.csv (753 bytes)
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Title P.am_tandem
Downloaded 6 times
Description Same as Genepop file, but now in Tandem format
Download P.am_tandem.csv (9.77 Kb)
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Title T.cur_tandem
Downloaded 3 times
Description Same as Genepop file, but now in Tandem format
Download T.cur_tandem.csv (26.51 Kb)
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Title T.longispinosus_tandem
Downloaded 6 times
Description Same as Genepop file, but now in Tandem format
Download T.lon_tandem.csv (20.78 Kb)
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Title RscriptMicroSatsWithPermutation
Downloaded 12 times
Description R script to calculate D and Gst and the associated p-values
Download RscriptMicroSatsWithPermutation.r (7.251 Kb)
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Title RAllPops_D_Gst_MtDNA_PenningsJEB2011
Downloaded 3 times
Description This is R code to calculate Jost D and Gst and the associated p-values (using a permutation test) for MtDNA sequences. There are two versions. The first one (RPairw_D_MtDna_Penningsjeb2011.r) calculates pairwise values (between all pairs of populations in your data) and the second one (RAllPops_D_MtDNA_PenningsJEB2011.r) calculates one global value.
Download RAllPops_D_Gst_MtDNA_PenningsJEB2011.r (10.09 Kb)
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Title RPairw_D_Gst_MtDna_Penningsjeb2011
Downloaded 5 times
Description This is R code to calculate Jost D and Gst and the associated p-values (using a permutation test) for MtDNA sequences. There are two versions. The first one (RPairw_D_MtDna_Penningsjeb2011.r) calculates pairwise values (between all pairs of populations in your data) and the second one (RAllPops_D_MtDNA_PenningsJEB2011.r) calculates one global value.
Download RPairw_D_Gst_MtDna_Penningsjeb2011.r (11.12 Kb)
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Title RScript_MtDNA_JostD_and_Gst_Permutation
Downloaded 44 times
Download RScript_MtDNA_JostD_and_Gst_Permutation.pdf (56.65 Kb)
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When using this data, please cite the original publication:

Pennings PS, Achenbach A, Foitzik S (2011) Similar evolutionary potentials in an obligate ant parasite and its two host species. Journal of Evolutionary Biology 24(4): 871–886. http://dx.doi.org/10.1111/j.1420-9101.2010.02223.x

Additionally, please cite the Dryad data package:

Pennings PS, Achenbach A, Foitzik S (2011) Data from: Similar evolutionary potentials in an obligate ant parasite and its two host species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8134.2
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