Data from: Evaluating the reliability of microsatellite genotyping from low-quality DNA templates with a polynomial distribution model

He G, Huang K, Guo S, Ji W, Ren Y, Jin X, Li B

Date Published: December 20, 2010

DOI: http://dx.doi.org/10.5061/dryad.8164

 

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Title Consensus Genotype
Downloaded 33 times
Description Genotype file of 26 individuals at 5 SSR loci.
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Title Calculation_Program_of_Fig.3 (C Program Source File)
Downloaded 9 times
Description Source file of the program calculating the estimated number of replicates and the reduction in the number of replicates of heterozygotes and homozygotes using multiple-steps method at the 99% confidence level.
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Title Data of Fig.3
Downloaded 42 times
Description The estimated number of replicates and the reduction in the number of replicates of heterozygotes and homozygotes using multiple-steps method at the 99% confidence level. Sheet1 are the estimated numbers of replicates of heterozygotes. Sheet1 are the estimated numbers of replicates of homozygotes. Sheet3 and Sheet4 are selected genotyping approaches.
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Title Calculation Program of Fig.3 (win32 application)
Downloaded 27 times
Description Calculation Program of Fig.3 (win32 application compiled with Visual Studio 2008)
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Title Reliability Calculator (win32 application)
Downloaded 44 times
Description Reliability Calculator (win32 application complied with Visual Studio 2008) Reliability Calculator for Microsatellite Genotyping Using low quality DNA templates Functions: 1. Generate a table of minimum thresholds of R1 and R2 at a given confidence level; 2. Find approaches reach a given confidence level for given R1 and R2; 3. Generate a table of minimum thresholds of R1 and R2 at a given confidence level (P(E1) is calculated by equation (4)); 4. Find approaches reach a given confidence level for given R1 and R2 (P(E1) iscalculated by equation (4)); 5. Calculate the lower limit of one-sided confidence interval; 6. Simulate the expected number of replicates for given R1, R2, ms and ns;
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Title Reliability Calculator (C Program Source File)
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Description Reliability Calculator (C Program Source File)
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When using this data, please cite the original publication:

He G, Huang K, Guo S, Ji W, Ren Y, Jin X, Li B (2011) Evaluating the reliability of microsatellite genotyping from low-quality DNA templates with a polynomial distribution model. Chinese Science Bulletin 56(24): 2523-2530. http://dx.doi.org/10.1007/s11434-011-4634-5

Additionally, please cite the Dryad data package:

He G, Huang K, Guo S, Ji W, Ren Y, Jin X, Li B (2011) Data from: Evaluating the reliability of microsatellite genotyping from low-quality DNA templates with a polynomial distribution model. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8164
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