Data from: Recent selection for self-compatibility in a population of Leavenworthia alabamica

Herman AC, Schoen DJ

Date Published: May 18, 2016

DOI: http://dx.doi.org/10.5061/dryad.82vm4

 

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Title Individual bam files used in population genomic analyses
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Description The data consist of MIseq amplicon reads mapped to the file available in 'A2 reference for read mapping'.
Download a2_bams.zip (652.5 Mb)
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Title A2 reference for read mapping
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Description This reference consists of 2 fasta entries: s_region and unlinked. The s_region is concatenated sequence from all S-linked contigs/scaffolds from the reference assembly (A2 reference genome assembly) for which we had amplicon data. The same is true for the unlinked entry, except these contigs/scaffolds were not physically linked to the S-locus
Download a2_pseudoS_genome_2chroms.txt (692.9 Kb)
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Title Hatton variants in A2 read mapping reference
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Description This file is a version of the A2 read mapping reference file with the Hatton SNP variants inserted. This file served as our ancestral sequence for polarizing the SFS.
Download a2_hatton_insert_2chroms.txt (692.9 Kb)
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Title A2 reference genome assembly
Downloaded 3 times
Description The A2 genome assembly that was used to determine contigs/scaffolds homologous to the S-locus region from the well-assembled Russellville reference (http://grandiflora.eeb.utoronto.ca:8190/cgi-bin/hgGateway).
Download LA_A2_ray31_sdn_61scafSeq.fa (171.2 Mb)
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Title Hatton reference genome assembly
Downloaded 2 times
Description This is the reference assembly for the Hatton (SI) population of L. alabamica.
Download LalSRKrun2_41_61.scafSeq (234.3 Mb)
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When using this data, please cite the original publication:

Herman AC, Schoen DJ (2016) Recent selection for self-compatibility in a population of Leavenworthia alabamica. Evolution 70(6): 1212–1224. http://dx.doi.org/10.1111/evo.12937

Additionally, please cite the Dryad data package:

Herman AC, Schoen DJ (2016) Data from: Recent selection for self-compatibility in a population of Leavenworthia alabamica. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.82vm4
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