Data from: Divergence history of the Carpathian and smooth newts modelled in space and time

ZIeliński P, Nadachowska-Brzyska K, Dudek K, Babik W

Date Published: June 14, 2016

DOI: http://dx.doi.org/10.5061/dryad.83k00

 

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Title L.montandoni VCF's
Downloaded 5 times
Description Variant calling files (VCF) for L. montandoni individuals. Archive consists of 2886 VCF files - one for each individual (39) times each gene (74)
Download L_montandoni_VCFs.zip (124.8 Mb)
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Title L.vulgaris VCF's
Downloaded 2 times
Description Variant calling files (VCF) for L. vulgaris individuals. Archive consists of 3330 VCF files - one for each individual (45) times each gene (74)
Download L_vulgaris_VCFs.zip (149.1 Mb)
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Title Poly dataset
Downloaded 6 times
Description Alignments of sequenced markers used to calculate polymorphism and differentiation, so called Poly dataset in the publication. Archive consists of 74 fasta files. Sequence names consist of marker name, individual name (correspond to Table S1) and allele.
Download Poly_dataset.zip (6.382 Mb)
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Title ABC dataset
Downloaded 10 times
Description Fasta file containing alignment of sequences used to calculate observed summary statistics. So called ABC dataset in the publication.
Download Exons_dataset.fasta (1.852 Mb)
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Title Cleaned fasta files
Downloaded 8 times
Description ABC dataset was obtained from these files by subsampling random gene copy per population. Archive consists of 66 cleaned (no gaps, no alignment columns with missing data, no individuals with more than 10% missing data) fasta files.
Download Fasta files.zip (3.782 Mb)
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When using this data, please cite the original publication:

ZIeliński P, Nadachowska-Brzyska K, Dudek K, Babik W (2016) Divergence history of the Carpathian and smooth newts modelled in space and time. Molecular Ecology 25(16): 3912–3928. http://dx.doi.org/10.1111/mec.13724

Additionally, please cite the Dryad data package:

ZIeliński P, Nadachowska-Brzyska K, Dudek K, Babik W (2016) Data from: Divergence history of the Carpathian and smooth newts modelled in space and time. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.83k00
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