Data from: Microevolutionary processes generate phylogenomic discordance at ancient divergences

Oliver JC

Date Published: January 24, 2013

DOI: http://dx.doi.org/10.5061/dryad.88qf4

 

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Title Angiosperm trees used for simulations, based on estimate of Bell et al. 2010.
Downloaded 48 times
Description Phylogenetic estimate of flowering plants and phylogenies used in simulations. Original tree is in 'Original Tree' tree block. 'Trees for simulation' tree block contains 100 trees with (i) branch lengths scaled to generation time and (ii) branch widths scaled to effective population size as described in Oliver (2013). Dated phylogenetic estimate was originally published in: Bell, C. D., D. E. Soltis, and P. S. Soltis. 2010. The age and diversification of the angiosperms re-revisited. Am. J. Bot. 97:1296-1303.
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Title Bird trees used for simulations, based on estimate of Hackett et al. 2008.
Downloaded 43 times
Description Phylogenetic estimate of modern birds and phylogenies used in simulations. Original tree is in 'Original Tree' tree block. 'Trees for simulation' tree block contains 100 trees with (i) branch lengths scaled to generation time and (ii) branch widths scaled to effective population size as described in Oliver (2013). Dated phylogenetic estimate was originally published in: Hackett, S. J., R. T. Kimball, S. Reddy, R. C. K. Bowie, E. L. Braun, M. J. Braun, J. L. Chojnowski, W. A. Cox, K.-L. Han, J. Harshman, et al. 2008. A phylogenomic study of birds reveals their evolutionary history. Science 320:1763-1768.
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Title Harpaline beetle trees used for simulations, based on estimate of Ober and Heider 2010.
Downloaded 37 times
Description Phylogenetic estimate of harpaline beetles and phylogenies used in simulations. Original tree is in 'Original Tree' tree block. 'Trees for simulation' tree block contains 100 trees with (i) branch lengths scaled to generation time and (ii) branch widths scaled to effective population size as described in Oliver (2013). Dated phylogenetic estimate was originally published in: Ober, K.A. and T. N. Heider. 2010. Phylogenetic diversification patterns and divergence times in ground beetles (Coleoptera: Carabidae: Harpalinae). BMC Evol. Biol. 10:262.
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Title Mammal trees used for simulations, based on estimate of Meredith et al. 2011.
Downloaded 77 times
Description Phylogenetic estimate of mammals and phylogenies used in simulations. Original tree is in 'Original Tree' tree block. 'Trees for simulation' tree block contains 100 trees with (i) branch lengths scaled to generation time and (ii) branch widths scaled to effective population size as described in Oliver (2013). Dated phylogenetic estimate was originally published in: Meredith, R. W. J. E. Janečka, J. Gatesy, O. A. Ryder, C. A. Fisher, E. C. Teeling, A. Goodbla, E. Eizirik, T. L. L. Simão, T. Stadler, et al. 2011. Impacts of the Cretaceous terrestrial revolution and KPg extinction on mammal diversification. Science 334:521-524.
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Title Nymphalid butterfly trees used for simulations, based on estimate of Wahlberg et al. 2009.
Downloaded 46 times
Description Phylogenetic estimate of nymphalid butterflies and phylogenies used in simulations. Original tree is in 'Original Tree' tree block. 'Trees for simulation' tree block contains 100 trees with (i) branch lengths scaled to generation time and (ii) branch widths scaled to effective population size as described in Oliver (2013). Dated phylogenetic estimate was originally published in: Wahlberg, N., J. Leneveu, U. Kodandaramaiah, C. Peña, S. Nylin, A. V. L. Freitas, and A. V. Z. Brower. 2009. Nymphalid butterflies diversify following near demise at the Cretaceous/Tertiary boundary. Proc. R. Soc. B 276:4295-4302.
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When using this data, please cite the original publication:

Oliver JC (2013) Microevolutionary processes generate phylogenomic discordance at ancient divergences. Evolution 67(6): 1823–1830. http://dx.doi.org/10.1111/evo.12047

Additionally, please cite the Dryad data package:

Oliver JC (2013) Data from: Microevolutionary processes generate phylogenomic discordance at ancient divergences. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.88qf4
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