Data from: Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): inference from transcriptome-wide coalescence analyses

Nürnberger B, Lohse K, Fijarczyk A, Szymura JM, Blaxter ML

Date Published: June 2, 2016

DOI: http://dx.doi.org/10.5061/dryad.88r69

 

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Title ReadMe
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Description Description of the data package, associated submissions, and contents of files
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Title reference_contigs_Bbo
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Description List of contig names in the Bombina bombina reference transcriptome
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Title reference_contigs_Bvv
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Description List of contig names in the Bombina variegata variegata reference transcriptome
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Title reference_contigs_Bvs
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Description List of contig names in the Bombina variegata scabra reference transcriptome
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Title reference_contigs_Bor
Description List of contig names in the Bombina orientalis reference transcriptome
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Title OrthoMCL_orfs_Bbo
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Description Predicted peptide sequences from the Bombina bombina reference transcriptome
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Title OrthoMCL_orfs_Bvv
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Description Predicted peptide sequences from the Bombina variegata variegata reference transcriptome
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Title OrthoMCL_orfs_Bvs
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Description Predicted peptide sequences from the Bombina variegata scabra reference transcriptome
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Title OrthoMCL_orfs_Bor
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Description Predicted peptide sequences from the Bombina orientalis reference transcriptome
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Title OrthoMCL_peptides_Xtr
Description Peptide sequences from the Silurana (Xenopus) tropicalis proteome
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Title OrthoMCL_groups_1.5
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Description Unfiltered OrthoMCL clusters (inflation value = 1.5)
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Title RobustGroups_4tax
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Description Robust orthogroups
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Title RobustGroups_4tax_no_multiorf_index
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Description Robust orthogroups, after removal of clusters that contain contigs with more than one ORF predition
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Title orthogroup_alignments_Bvv_Bbo
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Description Cross-taxon nucleotide alignments within robust orthogroups (B. v. variegata/B. bombina)
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Title orthogroup_alignments_Bvv_Bor
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Description Cross-taxon nucleotide alignments within robust orthogroups (B. v. variegata/B. orientalis)
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Title orthogroup_alignments_Bvv_Bvs
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Description Cross-taxon nucleotide alignments within robust orthogroups (B. v. variegata/B. v. scabra)
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Title site_counts_Bvv_Bbo
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Description Counts of variable sites in blocks of 150 fourfold degenerate sites (B. v. varieagta/B. bombina)
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Title site_counts_Bvv_Bor
Downloaded 2 times
Description Counts of variable sites in blocks of 150 fourfold degenerate sites (B. v. varieagta/B. orientalis)
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Title site_counts_Bvv_Bvs
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Description Counts of variable sites in blocks of 150 fourfold degenerate sites (B. v. varieagta/B. v. scabra)
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Title Roche454_paralogue_names_Bbo
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Description List of alternate contig names for B. bombina Roche 454 paralogues
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Title Roche454_paralogue_names_Bvv
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Description List of alternate contig names for B. v. variegata Roche 454 paralogues
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When using this data, please cite the original publication:

Nürnberger B, Lohse K, Fijarczyk A, Szymura JM, Blaxter ML (2016) Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): inference from transcriptome-wide coalescence analyses. Evolution 70(8): 1803-1818. http://dx.doi.org/10.1111/evo.12978

Additionally, please cite the Dryad data package:

Nürnberger B, Lohse K, Fijarczyk A, Szymura JM, Blaxter ML (2016) Data from: Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): inference from transcriptome-wide coalescence analyses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.88r69
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