Data from: Adaptive radiation and ecological opportunity in Sulawesi and Philippine fanged frog (Limnonectes) communities.

Setiadi MI, McGuire JA, Brown RM, Zubairi M, Iskandar DT, Andayani N, Supriatna J, Evans BJ

Date Published: March 24, 2011

DOI: http://dx.doi.org/10.5061/dryad.8913

 

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Title Unique MtDNA sequences
Description see README file for key to mtDNA unique sequences; each unique sequence corresponds to one or more field codes, each of which corresponds to an individual frog.
Download Lim_rdna_bar_unique.bayes (1.271 Mb)
Download README.txt (20.81 Kb)
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Title RAG1 sequences
Description Rag1 nexus file used for MrBayes
Download Limrag1sula_codon_updatfinal.nxs (151.7 Kb)
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Title BP&P input file 1 for microtympanum and arathooni
Description BP&P input file 1 for microtympanum and arathooni
Download microara_bpp_data.txt (32.32 Kb)
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Title BP&P input file 2 for microtympanum and arathooni
Description BP&P input file 2 for microtympanum and arathooni
Download microara.Imap.txt (624 bytes)
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Title modestus BP&P input file 1
Description modestus BP&P input file 1
Download modestus_bpp_data.txt (101.5 Kb)
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Title modestus BP&P input file 2
Description modestus BP&P input file 2
Download modestus.Imap.txt (1.139 Kb)
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Title spT BP&P input file 1
Description spT BP&P input file 1
Download spT_bpp_data.txt (35.86 Kb)
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Title spT BP&P input file 2
Description spT BP&P input file 2
Download spT.Imap.txt (618 bytes)
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Title spV BP&P input file 1
Description spV BP&P input file 1
Download spV_bpp_data.txt (8.18 Kb)
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Title spV BP&P input file 2
Description spV BP&P input file 2
Download spV.Imap.txt (421 bytes)
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Title Partial Mantel: Phil female morph distance
Description Philippine limnonectes female morphological distances for partial mantel test
Download phil_f_morphdeltasquare.txt (563 bytes)
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Title Partial Mantel: Phil male morph distance
Description Philippine limnonectes male morphological distances for partial mantel test
Download phil_m_morphdeltasquare.txt (576 bytes)
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Title Partial Mantel: Phil mtDNA genetic distance
Description Philippine limnonectes mitochondrial DNA genetic distances for partial mantel test
Download phil_mt_resolved_chronogram.patristic.txt (580 bytes)
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Title Partial Mantel: Phil RAG1 genetic distance
Description Philippine limnonectes rag1 genetic distances for partial mantel test
Download phil_rag_resolved_chronogram.patristic.txt (572 bytes)
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Title Partial Mantel: Phil sympatry distance
Description Philippine limnonectes sympatry distances for partial mantel test
Download phil_sympatry.txt (275 bytes)
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Title Partial Mantel: Sulawesi female morph distance
Description Sulawesi Limnonectes female morphological distances for partial mantel test
Download sula_f_morphdeltasquare.txt (681 bytes)
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Title Partial Mantel: Sulawesi male morph distance
Description Sulawesi Limnonectes male morphological distances for partial mantel test
Download sula_m_morphdeltasquare.txt (672 bytes)
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Title Partial Mantel: Sulawesi mtDNA genetic distance
Description Sulawesi Limnonectes mitochondrial DNA genetic distances for partial mantel test
Download sula_mt_resolved_chronogram.patristic.txt (672 bytes)
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Title Partial Mantel: Sulawesi RAG1 genetic distance
Description Sulawesi Limnonectes RAG1 genetic distances for partial mantel test
Download sula_rag_resolved_chronogram.patristic.txt (618 bytes)
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Title Partial Mantel: Sulawesi sympatry distance
Description Sulawesi Limnonectes sympatry distances for partial mantel test
Download sula_sympatry_precise.txt (530 bytes)
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Title Brownie mtDNA input file for females
Description Brownie mtDNA input file for females
Download limno_mt_in_femalez_ln.nex (6.318 Kb)
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Title Brownie mtDNA input file for males
Description Brownie mtDNA input file for males
Download limno_mt_in_malez_ln.nex (6.318 Kb)
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Title Brownie rag1 input file for females
Description Brownie rag1 input file for females
Download limno_rag_in_femalez.nex (6.131 Kb)
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Title Brownie rag1 input file for males
Description Brownie rag1 input file for males
Download limno_rag_in_malez.nex (6.123 Kb)
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Title OUCH mtDNA input file for females
Description OUCH mtDNA input file for females
Download mtDNA_ouch_females_ln_size (3.575 Kb)
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Title OUCH mtDNA input file for males
Description OUCH mtDNA input file for males
Download mtDNA_ouch_males_ln_size (3.573 Kb)
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Title OUCH rag1 input file for females
Description OUCH rag1 input file for females
Download rag_ouch_females_ln_size (3.021 Kb)
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Title OUCH rag1 input file for males
Description OUCH rag1 input file for males
Download rag_ouch_males_ln_size (3.023 Kb)
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Title MtDNA tree
Description Consensus topology recovered from MrBayes analysis of unique mtDNA sequences
Download Lim_rdna_bar_unique.bayes.con (21.70 Kb)
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Title RAG1 tree
Description Consensus topology recovered from MrBayes analysis of RAG1 sequences
Download Limrag1sula_codon_updatfinal.nxs.con (8.306 Kb)
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Title Locality information
Description Locality information for genetic samples in this study
Download SI_appendix.xls (128 Kb)
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When using this data, please cite the original publication:

Setiadi MI, McGuire JA, Brown RM, Zubairi M, Iskandar DT, Andayani N, Supriatna J, Evans BJ (2011) Adaptive radiation and ecological opportunity in Sulawesi and Philippine fanged frog (Limnonectes) communities. American Naturalist 178(2): 221-240. http://dx.doi.org/10.1086/660830

Additionally, please cite the Dryad data package:

Setiadi MI, McGuire JA, Brown RM, Zubairi M, Iskandar DT, Andayani N, Supriatna J, Evans BJ (2011) Data from: Adaptive radiation and ecological opportunity in Sulawesi and Philippine fanged frog (Limnonectes) communities. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8913
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