Data from: Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux

Lynch EA, Langille MGI, Darling A, Wilbanks EG, Haltiner C, Shao KSY, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT

Date Published: August 30, 2012

DOI: http://dx.doi.org/10.5061/dryad.89v53

 

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Title RAST_Annotations
Downloaded 87 times
Description RAST-generated annotations for all genomes included in the analyses in this manuscript.
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Title Raw_sequence_reads
Downloaded 79 times
Description Fragment libraries were constructed for eight species of the family Halobacteriacea, three from the genus Haloarcula (Har. californiae, Har. sinaiiensis, Har. vallismortis) and five from the genus Haloferax (Hfx. denitrificans, Hfx. mediterranei, Hfx. mucosum, Hfx. sulfurifontis, and Hfx. volcanii), and sequenced on a single GS FLX Titanium run following standard protocols (454 Life Sciences - http://454.com/). Hfx. volcanii was included as a sequencing control, as its genome had been completed previously [19]. Additionally, for Har. sinaiiensis and Hfx. mediterranei, 8 Kb pair-end libraries were constructed and the terminal 100 bp of each end was sequenced, according to standard protocols. The paired-end information and any trimming information are specified using annotation strings on the description line of the reads. Reads were assembled using the Genome Sequencer De Novo assembler (454 Life Sciences - http://www.my454.com/).
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When using this data, please cite the original publication:

Lynch EA, Langille MGI, Darling A, Wilbanks EG, Haltiner C, Shao KSY, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT (2012) Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. PLoS ONE 7(7): e41389. http://dx.doi.org/10.1371/journal.pone.0041389

Additionally, please cite the Dryad data package:

Lynch EA, Langille MGI, Darling A, Wilbanks EG, Haltiner C, Shao KSY, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT (2012) Data from: Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.89v53
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