Data from: Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively

Clifford J, Adami C

Date Published: September 17, 2015

DOI: http://dx.doi.org/10.5061/dryad.8b203

 

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Title Sequence Data
Downloaded 4 times
Description Sequence data of known binding sites for Dorsal transcription factors, and sequence data of known CRMs (see README file inside the folder).
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Title https://github.com/jacobclifford/MIBBS
Description MIBBS, Mutual Information Between Binding Sites, is a set of programs that generate all the figures for our Physical Biology paper, where the current program settings and input data are the same values as used in our Physical Biology paper. The git project contains a configure script to automatically compile our C/C++ code regardless of platform (see the README file in the MIBBS directory on github). Once one executes the configure script and runs make, then run masterscript.sh, which will create all eps files for all figures (see the README for necessary dependency programs, such as GNU Scientific Library and matlab (matlab is not necessary if one wishes to generate figures using some other utility)).
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When using this data, please cite the original publication:

Clifford J, Adami C (2015) Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively. Physical Biology 12: 056004. http://dx.doi.org/10.1088/1478-3975/12/5/056004

Additionally, please cite the Dryad data package:

Clifford J, Adami C (2015) Data from: Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8b203
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