Data from: Selection of Pairings Reaching Evenly Across the Data (SPREAD): a simple algorithm to design maximally informative fully crossed mating experiments

Zimmerman K, Levitis D, Addicott E, Pringle A

Date Published: August 20, 2015

DOI: http://dx.doi.org/10.5061/dryad.8br20

 

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Title Mating Types of Strains
Description This file contains the mating type information for all the Neurospora crassa strains used to test the SPREAD algorithm. The column labelled "FGSC" lists the Fungal Genetics Stock Center strain IDs and the column labelled "mat" lists the mating type. "AA" = mating type "A", "a" = mating type "a".
Download strain_mating_type.csv (570 bytes)
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Title All pairwise matings with genetic and geographic distance data
Downloaded 1 time
Description This CSV contains all 576 possible pairwise matings between the 24 mat-a and 24 mat-A Neurospora crassa strains used to test the SPREAD algorithm. FGSC1 and FGSC2 are the strain IDs of the pair, GeneticDistance is the genetic distance between the pair (number of different SNPs between parents) and GeographicDistance is km between strain isolation locales.
Download all_matings_distance.csv (15.89 Kb)
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Title Simulated spore production data for all pairwise matings
Description This CSV contains the simulated spore production data used to compute the population GLMM. Subsets of this data-set were used to calculate sample GLMMs. Please see readme file for information on column names.
Download all_matings_spore_simulations.csv (50.14 Kb)
Download README.txt (622 bytes)
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Title Figure2 R Script
Description R script to produce figure 2 from data in the SPREAD_Rdata.zip file. To run script, working directory should be the directory containing the unzipped data files.
Download Figure2_SPREAD.R (611 bytes)
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Title Figure3 Table2 R script
Description R script to produce figure 3 and table 2 from data in the SPREAD_Rdata.zip file. To run script, working directory should be the directory containing the unzipped data files.
Download Figure3_Table2_SPREAD.R (5.681 Kb)
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Title Figure4 R Script
Description R script to produce figure 4 from data in the SPREAD_Rdata.zip file. To run script, working directory should be the directory containing the unzipped data files.
Download Figure4_SPREAD.R (12.77 Kb)
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Title Table1 R Script
Description R script to produce Table 2 from data in the SPREAD_Rdata.zip file. To run script, working directory should be the directory containing the unzipped data files.
Download Table1_SPREAD.R (9.726 Kb)
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Title SPREAD_Rdata
Description This zip file contains 6 rdata files and one CSV file used to produce the figures. Please refer to the ReadMe for descriptions.
Download SPREAD_Rdata.zip (27.32 Mb)
Download README.txt (1.385 Kb)
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When using this data, please cite the original publication:

Zimmerman K, Levitis D, Addicott E, Pringle A (2015) Selection of Pairings Reaching Evenly Across the Data (SPREAD): a simple algorithm to design maximally informative fully crossed mating experiments. Heredity 116: 182-189. http://dx.doi.org/10.1038/hdy.2015.88

Additionally, please cite the Dryad data package:

Zimmerman K, Levitis D, Addicott E, Pringle A (2015) Data from: Selection of Pairings Reaching Evenly Across the Data (SPREAD): a simple algorithm to design maximally informative fully crossed mating experiments. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8br20
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