Data from: Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs

Wang C, Wang H, Zhang Y, Tang Z, Li K, Liu B

Date Published: July 29, 2014

DOI: http://dx.doi.org/10.5061/dryad.8c930

 

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Title SNPs called from Tongcheng pool and seven Chinese wild boars
Downloaded 31 times
Description This table includes the genome-wide SNP data called from Tongcheng pool and seven Chinese wild boars. column 1 & 2: chromosome and position according to Sscrofa 10.2 assembly. column 3: the reference allele according to Sscrofa 10.2 assembly. column 4: the variant allele identified from sequencing data. column 5-11: genotypes of Chinese wild boars, and “00”means the missing genotype. column 12: count of reference allele reads identified from the Tongcheng sequencing pool. column 13: count of variant allele reads identified fromthe Tongcheng sequencing pool
Download SNPs_bwteen_tongcheng_pool_and_Chinese_wi...rs.txt (308.5 Mb)
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Title SNPs called from 54 individually sequenced pigs at 32.475-32.775 Mb on chromosome 3
Downloaded 14 times
Description This table includes the SNP data at 32.475-32.775 Mb on chromosome 3, and the variants are called from 54 individually sequenced pigs from 11 populations. “00” indicates the missing genotype. column 1 & 2: chromosome and position according to Sscrofa 10.2 assembly. column 3: the reference allele according to Sscrofa 10.2 assembly. column 4: the variant allele identified from sequencing data. column 5- 8: genotypes of four Duroc pigs. column 9-12: genotypes of four Meishan pigs. column 13-19 genotypes of seven Chinese wild boars. column 20-22 genotypes of three Jinhua pigs. column 23-28 genotypes of six Landrace pigs. column 29-42 genotypes of 14 Large White pigs. column 43-45 genotypes of three Neijiang pigs. column 46-48 genotypes of three Penzhou pigs. column 49-52 genotypes of four Tongcheng pigs. column 53-55 genotypes of three Wujin pigs. column 56-58 genotypes of three Yanan pigs
Download chr3.txt (17.8 Kb)
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Title SNPs called from 54 individually sequenced pigs at 102.3-102.675 Mb on chromosome 13
Downloaded 8 times
Description This table includes the SNP data at 102.3-102.675 Mb on chromosome 13, and the variants are called from 54 individually sequenced pigs from 11 populations. “00” indicates the missing genotype. column 1 & 2: chromosome and position according to Sscrofa 10.2 assembly. column 3: the reference allele according to Sscrofa 10.2 assembly. column 4: the variant allele identified from sequencing data. column 5- 8: genotypes of four Duroc pigs. column 9-12: genotypes of four Meishan pigs. column 13-19 genotypes of seven Chinese wild boars. column 20-22 genotypes of three Jinhua pigs. column 23-28 genotypes of six Landrace pigs. column 29-42 genotypes of 14 Large White pigs. column 43-45 genotypes of three Neijiang pigs. column 46-48 genotypes of three Penzhou pigs. column 49-52 genotypes of four Tongcheng pigs. column 53-55 genotypes of three Wujin pigs. column 56-58 genotypes of three Yanan pigs
Download chr13.txt (102.9 Kb)
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Title SNPs called from 54 individually sequenced pigs at 71.775-72.15 Mb on chromosome 14
Downloaded 10 times
Description This table includes the SNP data at 71.775-72.15 Mb on chromosome 14, and the variants are called from 54 individually sequenced pigs from 11 populations. “00” indicates the missing genotype. column 1 & 2: chromosome and position according to Sscrofa 10.2 assembly. column 3: the reference allele according to Sscrofa 10.2 assembly. column 4: the variant allele identified from sequencing data. column 5- 8: genotypes of four Duroc pigs. column 9-12: genotypes of four Meishan pigs. column 13-19 genotypes of seven Chinese wild boars. column 20-22 genotypes of three Jinhua pigs. column 23-28 genotypes of six Landrace pigs. column 29-42 genotypes of 14 Large White pigs. column 43-45 genotypes of three Neijiang pigs. column 46-48 genotypes of three Penzhou pigs. column 49-52 genotypes of four Tongcheng pigs. column 53-55 genotypes of three Wujin pigs. column 56-58 genotypes of three Yanan pigs
Download chr14.txt (50.47 Kb)
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Title SNPs called from 54 individually sequenced pigs at 60-109.95 Mb on chromosome X
Downloaded 6 times
Description This table includes the SNP data at 60-109.95 Mb on chromosome X, and the variants are called from 54 individually sequenced pigs from 11 populations. “00” indicates the missing genotype. column 1 & 2: chromosome and position according to Sscrofa 10.2 assembly. column 3: the reference allele according to Sscrofa 10.2 assembly. column 4: the variant allele identified from sequencing data. column 5- 8: genotypes of four Duroc pigs. column 9-12: genotypes of four Meishan pigs. column 13-19 genotypes of seven Chinese wild boars. column 20-22 genotypes of three Jinhua pigs. column 23-28 genotypes of six Landrace pigs. column 29-42 genotypes of 14 Large White pigs. column 43-45 genotypes of three Neijiang pigs. column 46-48 genotypes of three Penzhou pigs. column 49-52 genotypes of four Tongcheng pigs. column 53-55 genotypes of three Wujin pigs. column 56-58 genotypes of three Yanan pigs
Download chrX.txt (1.362 Mb)
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When using this data, please cite the original publication:

Wang C, Wang H, Zhang Y, Tang Z, Li K, Liu B (2015) Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs. Molecular Ecology Resources 15(2): 414-424. http://dx.doi.org/10.1111/1755-0998.12311

Additionally, please cite the Dryad data package:

Wang C, Wang H, Zhang Y, Tang Z, Li K, Liu B (2014) Data from: Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8c930
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