Data from: Genetic depletion at adaptive but not neutral loci in an endangered bird species

Hartmann SA, Schaefer HM, Segelbacher G

Date Published: October 23, 2014

DOI: http://dx.doi.org/10.5061/dryad.8c9s1

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title MSAT MASTERFILE genotypes Apallidiceps Alatinuchus Btorquatus
Downloaded 43 times
Description includes all genotypes of all three species including museum samples across all 11 microsatellites
Download MSAT MASTERFILE genotypes Apallidiceps Ala....xlsx (30.81 Kb)
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Title T1A_Toll like receptor sequences_allspecies
Downloaded 2 times
Description contains all TLR 1A sequences for all individuals across all three species as analysed in our study.
Download T1A_Toll like receptor sequences_allspecies.fas (105.6 Kb)
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Title T1B_Toll like receptor sequences_allspecies
Downloaded 5 times
Description contains all TLR 1B sequences for all individuals across all three species as analysed in our study.
Download T1B_Toll like receptor sequences_allspecies.fas (100.3 Kb)
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Title T4_Toll like receptor sequences_allspecies
Downloaded 3 times
Description contains all TLR 4 sequences for all individuals across all three species as analysed in our study.
Download T4_Toll like receptor sequences_allspecies.fas (82.99 Kb)
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Title T5_Toll like receptor sequences_allspecies
Downloaded 2 times
Description contains all TLR 5 sequences for all individuals across all three species as analysed in our study.
Download T5_Toll like receptor sequences_allspecies.fas (39.75 Kb)
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Title T21_Toll like receptor sequences_allspecies
Downloaded 5 times
Description contains all TLR 21 sequences for all individuals across all three species as analysed in our study.
Download T21_Toll like receptor sequences_allspecies.fas (67.96 Kb)
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Title MSvar evaluation Rcode
Downloaded 97 times
Description The R code we used to assess the output from MSvar simulations
Download MSvar evaluation Rcode.R (6.727 Kb)
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Title hpars_output_input_MSVar evaluation R
Downloaded 10 times
Description the output (hpars file) which one receives after each MSvar simulation. This is the file you need as input for the assessment in R the code for which is equally uploaded here.
Download hpars_output_input_MSVar evaluation R.dat (2.028 Mb)
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When using this data, please cite the original publication:

Hartmann SA, Schaefer HM, Segelbacher G (2014) Genetic depletion at adaptive but not neutral loci in an endangered bird species. Molecular Ecology 23(23): 5712-5725. http://dx.doi.org/10.1111/mec.12975

Additionally, please cite the Dryad data package:

Hartmann SA, Schaefer HM, Segelbacher G (2014) Data from: Genetic depletion at adaptive but not neutral loci in an endangered bird species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8c9s1
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