Data from: Gene duplication and gene expression changes play a role in the evolution of candidate pollen feeding genes in Heliconius butterflies

Smith G, Macias-Muñoz A, Briscoe AD

Date Published: August 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.8d724

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Annotation file of open reading frames from 5 butterfly species
Downloaded 15 times
Description This is an annotation file for open reading frames (ORFs) from five species of heliconiine butterflies. The file includes ORFs from all five species, top BLAST hits, and the ortholog group the ORF belongs to. Column headers are as follows: "Row#" (row number), "Seq_ID" (sequence ID, including: 3 letter species code [Eis = Eueides isabella, Hdo = Heliconius doris, Her = Heliconius erato, Hmel = Heliconius melpomene, Hsa = Heliconius sara], Trinity 'gene' contig ID [e.g., compXXXX_cX], and ORF coordinates within contig), "H-ID" (hit ID), "H-Eval" (hit e-value), "H-Desc" (hit description), "H-Species" (hit species), "H-Type" (hit type), "H-Tag" (hit database), "H-Len" (hit length), and "OM" (orthocluster membership). NOTE: The program TCW produces two BLAST hits: 1. Best e-value, 2. best e-value with best evidence. The ones presented here are number 2.
Download Annotation_file_of_ORFs_from_5_species_in...ip.txt (9.301 Mb)
Details View File Details
Title Eueides isabella Trinity assembly
Downloaded 3 times
Description This is a fasta format file containing all mRNA contigs for Eueides isabella. The assembly was performed in Trinity version "20130216" and is a raw output that includes all assembled contigs (see Table 1 for contig counts). Assembly was carried out as described in the Methods section of the publication.
Download Eueides_isabella_Trinity_assembly_Dryad.fasta (97.63 Mb)
Details View File Details
Title Heliconius doris Trinity assembly
Downloaded 2 times
Description This is a fasta format file containing all mRNA contigs for Heliconius doris. The assembly was performed in Trinity version "20130216" and is a raw output that includes all assembled contigs (see Table 1 for contig counts). Assembly was carried out as described in the Methods section of the publication.
Download Heliconius_doris_Trinity_assembly_Dryad.fasta (124.7 Mb)
Details View File Details
Title Heliconius erato Trinity assembly
Downloaded 2 times
Description This is a fasta format file containing all mRNA contigs for Heliconius erato. The assembly was performed in Trinity version "20130216" and is a raw output that includes all assembled contigs (see Table 1 for contig counts). Assembly was carried out as described in the Methods section of the publication.
Download Heliconius_erato_Trinity_assembly_Dryad.fasta (154.9 Mb)
Details View File Details
Title Heliconius melpomene Trinity assembly
Downloaded 27 times
Description This is a fasta format file containing all mRNA contigs for Heliconius melpomene. The assembly was performed in Trinity version "20130216" and is a raw output that includes all assembled contigs (see Table 1 for contig counts). Assembly was carried out as described in the Methods section of the publication.
Download Heliconius_melpomene_Trinity_assembly_Dryad.fasta (243.6 Mb)
Details View File Details
Title Heliconius sara Trinity assembly
Downloaded 3 times
Description This is a fasta format file containing all mRNA contigs for Heliconius sara. The assembly was performed in Trinity version "20130216" and is a raw output that includes all assembled contigs (see Table 1 for contig counts). Assembly was carried out as described in the Methods section of the publication.
Download Heliconius_sara_Trinity_assembly_Dryad.fasta (99.47 Mb)
Details View File Details
Title Eueides isabella RSEM mapped count data
Downloaded 4 times
Description File is count data (expression level) output of Trinity contigs from RSEM for Eueides isabella. Column headers contain species name, sex (M or F), specimen ID (see Table S1 for details), and tissue type ("ant" = antennae, "leg" = legs, and "mou" = mouthparts).
Download Eueides_isabella_RSEMmapped_count_data_3t...es.txt (1.030 Mb)
Details View File Details
Title Heliconius doris RSEM mapped count data
Downloaded 6 times
Description File is count data (expression level) output of Trinity contigs from RSEM for Heliconius doris. Column headers contain species name, sex (M or F), specimen ID (see Table S1 for details), and tissue type ("ant" = antennae, "leg" = legs, and "mou" = mouthparts).
Download Heliconius_doris_RSEMmapped_count_data_3t...es.txt (1.067 Mb)
Details View File Details
Title Heliconius erato RSEM mapped count data
Downloaded 1 time
Description File is count data (expression level) output of Trinity contigs from RSEM for Heliconius erato. Column headers contain species name, sex (M or F), specimen ID (see Table S1 for details), and tissue type ("ant" = antennae, "leg" = legs, and "mou" = mouthparts).
Download Heliconius_erato_RSEMmapped_count_data_3t...es.txt (1.227 Mb)
Details View File Details
Title Heliconius melpomene RSEM mapped count data
Downloaded 8 times
Description File is count data (expression level) output of Trinity contigs from RSEM for Heliconius melpomene. Column headers contain sex (M or F), tissue type ("ant" = antennae, "leg" = legs, and "mou" = mouthparts), and sample number. See Table S1 for specimen IDs. Samples labelled "1" are the result of merging two technical replicates (see Methods section of paper for details).
Download Heliconius_melpomene_RSEMmapped_count_dat...es.txt (3.306 Mb)
Details View File Details
Title Heliconius sara RSEM mapped count data
Downloaded 4 times
Description File is count data (expression level) output of Trinity contigs from RSEM for Heliconius sara. Column headers contain species name, sex (M or F), specimen ID (see Table S1 for details), and tissue type ("ant" = antennae, "leg" = legs, and "mou" = mouthparts).
Download Heliconius_sara_RSEMmapped_count_data_3ti...es.txt (962.9 Kb)
Details View File Details

When using this data, please cite the original publication:

Smith G, Macias-Muñoz A, Briscoe AD (2016) Gene duplication and gene expression changes play a role in the evolution of candidate pollen feeding genes in Heliconius butterflies. Genome Biology and Evolution 8(8): 2581-2596. http://dx.doi.org/10.1093/gbe/evw180

Additionally, please cite the Dryad data package:

Smith G, Macias-Muñoz A, Briscoe AD (2016) Data from: Gene duplication and gene expression changes play a role in the evolution of candidate pollen feeding genes in Heliconius butterflies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8d724
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: