Data from: Incorporating single-step strategy into random regression model to enhance genomic prediction of longitudinal trait

Kang H, Zhou L, Mrode R, Zhang Q, Liu J

Date Published: August 18, 2016

DOI: http://dx.doi.org/10.5061/dryad.8df69

 

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Title simulated data under the scenario where heritability is 0.5
Downloaded 10 times
Description This package includes longitudinal data simulated under the scenario where heritability is 0.5. Files include pedigree file (ped), genotypic file (geno), phenotypic file (phe) and files containing true genetic value (tbv).
Download h2-0.5.zip (180.1 Mb)
Download README.txt (2.318 Kb)
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Title simulated data under the scenario where the number of QTL is 10
Downloaded 5 times
Description This package includes longitudinal data simulated under the scenario where the number of QTL is 10. Files include pedigree file (ped), genotypic file (geno), phenotypic file (phe) and files containing true genetic value (tbv).
Download QTL10.zip (174.7 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated data under the scenario where heritability is 0.1
Downloaded 6 times
Description This package includes longitudinal data simulated under the scenario where heritability is 0.1. Files include pedigree file (ped), genotypic file (geno), phenotypic file (phe) and files containing true genetic value (tbv).
Download h2-0.1.zip (180.3 Mb)
Download README.txt (2.318 Kb)
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Title simulated data under the scenario where the number of QTL is 500
Downloaded 5 times
Description This package includes longitudinal data simulated under the scenario where the number of QTL is 500. Files include pedigree file (ped), genotypic file (geno), phenotypic file (phe) and files containing true genetic value (tbv).
Download QTL500.zip (176.0 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data of replicates 1-7 under the scenario where males were selected based on predicted genetic value
Downloaded 6 times
Description This package includes simulated genotypic data under the scenario where males were selected based on predicted genetic value. The genotypic data were those from replicates 1-7.
Download non-random-sel-ped-phe-tbv.zip (25.37 Mb)
Download non-random-sel-geno-1-7.zip (213.5 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data of replicates 15-20 under the scenario where males were selected based on predicted genetic value
Downloaded 4 times
Description This package includes simulated genotypic data under the scenario where males were selected based on predicted genetic value. The genotypic data were those from replicates 15-20.
Download non-random-sel-geno-15-20.zip (182.6 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated data under the scenario where males were selected based on predicted genetic value
Downloaded 3 times
Description This package includes longitudinal data simulated under the scenario where males were selected based on predicted genetic value. Files include pedigree file (ped), phenotypic file (phe) and files containing true genetic value (tbv).
Download README.txt (2.318 Kb)
Download non-random-sel-ped-phe-tbv.zip (59.15 Mb)
Details View File Details
Title simulated data under the default scenario
Downloaded 4 times
Description This package includes longitudinal data simulated under the default scenario. Files include pedigree file (ped), phenotypic file (phe) and files containing true genetic value (tbv).
Download README.txt (2.318 Kb)
Download default-ped-phe-tbv.zip (58.62 Mb)
Details View File Details
Title simulated genotypic data of replicates 8-14 under the scenario where males were selected based on predicted genetic value
Downloaded 8 times
Description This package includes simulated genotypic data under the scenario where males were selected based on predicted genetic value. The genotypic data were those from replicates 8-14.
Download large-refpop-geno-1-10.zip (194.2 Mb)
Download non-random-sel-geno-8-14.zip (213.4 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data of 5 000 individuals from replicates 11-20 under the default scenario
Downloaded 5 times
Description This package includes genotypic data simulated under the default scenario. The genotypic data were from replicates 11-20. For each replicate, genotypic data were from training individuals and a larger training set compared to the default one.
Download large-refpop-geno-11-20.zip (194.3 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data of 5 000 individuals from replicates 1-10 under the default scenario
Downloaded 6 times
Description This package includes genotypic data simulated under the default scenario. The genotypic data were from replicates 1-10. For each replicate, genotypic data were from training individuals and a larger training set compared to the default one.
Download large-refpop-geno-1-10.zip (194.2 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data under the default scenario
Downloaded 5 times
Description This package includes genotypic data simulated under the default scenario. The genotypic data were from replicates 1-7.
Download default-geno-1-7.zip (218.2 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data under the default scenario
Downloaded 4 times
Description This package includes genotypic data simulated under the default scenario. The genotypic data were from replicates 8-14.
Download default-geno-8-14.zip (217.9 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title simulated genotypic data under the default scenario
Downloaded 3 times
Description This package includes genotypic data simulated under the default scenario. The genotypic data were from replicates 15-20.
Download default-geno-15-20.zip (187.3 Mb)
Download README.txt (2.318 Kb)
Details View File Details
Title generation files for simulated data under six scenarios
Downloaded 4 times
Description Generation files for simulated data under the six scenarios
Download README.txt (2.318 Kb)
Download generation.zip (1.256 Mb)
Details View File Details

When using this data, please cite the original publication:

Kang H, Zhou L, Mrode R, Zhang Q, Liu J (2016) Incorporating single-step strategy into random regression model to enhance genomic prediction of longitudinal trait. Heredity, online in advance of print. http://dx.doi.org/10.1038/hdy.2016.91

Additionally, please cite the Dryad data package:

Kang H, Zhou L, Mrode R, Zhang Q, Liu J (2016) Data from: Incorporating single-step strategy into random regression model to enhance genomic prediction of longitudinal trait. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8df69
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