Data from: Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass

Childs KL, Nandety A, Hirsch CN, Góngora-Castillo E, Schmutz J, Kaeppler SM, Casler MD, Buell CR

Date Published: April 4, 2014

DOI: http://dx.doi.org/10.5061/dryad.8f73k

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title all_switchgrass_SNPs_filtered.txt
Downloaded 14 times
Description SNPs identified within the switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Trailblazer, Carthage and Shelter.
Download all_switchgrass_SNPs_filtered.txt.bz2 (9.931 Mb)
Details View File Details
Title all_switchgrass_SNPs_with_context_sequence.txt
Downloaded 16 times
Description This file contains context sequence surrounding SNPs identified within the switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Trailblazer, Carthage and Shelter.
Download all_switchgrass_SNPs_with_context_sequence.txt.bz2 (53.60 Mb)
Details View File Details
Title Alamo_transcript_assemblies_all_isoforms.fasta
Downloaded 3 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Alamo. This file includes all transcript isoforms.
Download Alamo_transcript_assemblies_all_isoforms.fasta.bz2 (7.088 Mb)
Details View File Details
Title Alamo_transcript_assemblies_representative_isoforms.fasta
Downloaded 6 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Alamo. This file includes only representative transcript.
Download Alamo_transcript_assemblies_representativ...ta.bz2 (3.961 Mb)
Details View File Details
Title Carthage_transcript_assemblies_all_isoforms.fasta
Downloaded 8 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Carthage. This file includes all transcript isoforms.
Download Carthage_transcript_assemblies_all_isofor...ta.bz2 (9.343 Mb)
Details View File Details
Title Carthage_transcript_assemblies_representative_isoforms.fasta
Downloaded 6 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Carthage. This file includes only representative transcript.
Download Carthage_transcript_assemblies_representa...ta.bz2 (4.817 Mb)
Details View File Details
Title Pathfinder_transcript_assemblies_all_isoforms.fasta
Downloaded 8 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Pathfinder. This file includes all transcript isoforms.
Download Pathfinder_transcript_assemblies_all_isof...ta.bz2 (9.623 Mb)
Details View File Details
Title Pathfinder_transcript_assemblies_representative_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Pathfinder. This file includes only representative transcript.
Download Pathfinder_transcript_assemblies_represen...ta.bz2 (5.034 Mb)
Details View File Details
Title SG5_transcript_assemblies_all_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar SG5. This file includes all transcript isoforms.
Download SG5_transcript_assemblies_all_isoforms.fasta.bz2 (10.10 Mb)
Details View File Details
Title SG5_transcript_assemblies_representative_isoforms.fasta
Downloaded 6 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar SG5. This file includes only representative transcript.
Download SG5_transcript_assemblies_representative_...ta.bz2 (5.325 Mb)
Details View File Details
Title Shelter_transcript_assemblies_all_isoforms.fasta
Downloaded 7 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Shelter. This file includes all transcript isoforms.
Download Shelter_transcript_assemblies_all_isoform...ta.bz2 (9.925 Mb)
Details View File Details
Title Shelter_transcript_assemblies_representative_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Shelter. This file includes only representative transcript.
Download Shelter_transcript_assemblies_representat...ta.bz2 (5.384 Mb)
Details View File Details
Title Trailblazer_transcript_assemblies_all_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Trailblazer. This file includes all transcript isoforms.
Download Trailblazer_transcript_assemblies_all_iso...ta.bz2 (4.717 Mb)
Details View File Details
Title Trailblazer_transcript_assemblies_representative_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Trailblazer. This file includes only representative transcript.
Download Trailblazer_transcript_assemblies_represe...ta.bz2 (2.836 Mb)
Details View File Details
Title Wabasso_transcript_assemblies_all_isoforms.fasta
Downloaded 4 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Wabasso. This file includes all transcript isoforms.
Download Wabasso_transcript_assemblies_all_isoform...ta.bz2 (7.788 Mb)
Details View File Details
Title Wabasso_transcript_assemblies_representative_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Wabasso. This file includes only representative transcript.
Download Wabasso_transcript_assemblies_representat...ta.bz2 (4.332 Mb)
Details View File Details
Title combined_switchgrass_transcript_assemblies_all_isoforms.fasta
Downloaded 5 times
Description RNA-seq transcript assemblies created with Velvet/Oases using seven switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Shelter, Trailblazer and Carthage. This file includes all transcript isoforms.
Download combined_switchgrass_transcript_assemblie...ta.bz2 (22.53 Mb)
Details View File Details
Title combined_switchgrass_transcript_assemblies_representative_isoforms.fasta
Downloaded 9 times
Description RNA-seq transcript assemblies created with Velvet/Oases using seven switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Shelter, Trailblazer and Carthage. This file includes only representative transcript.
Download combined_switchgrass_transcript_assemblie...ta.bz2 (10.46 Mb)
Details View File Details

When using this data, please cite the original publication:

Childs KL, Nandety A, Hirsch CN, Góngora-Castillo E, Schmutz J, Kaeppler SM, Casler MD, Buell CR (2014) Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass. The Plant Genome 7(2). http://dx.doi.org/10.3835/plantgenome2013.12.0041

Additionally, please cite the Dryad data package:

Childs KL, Nandety A, Hirsch CN, Góngora-Castillo E, Schmutz J, Kaeppler SM, Casler MD, Buell CR (2014) Data from: Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8f73k
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: