Data from: Evolution of long centromeres in fire ants

Huang Y, Lee C, Kao C, Chang N, Lin C, Shoemaker D, Wang J

Date Published: November 23, 2016

DOI: http://dx.doi.org/10.5061/dryad.8ff71

 

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Title output_TRF_Sinv
Downloaded 8 times
Description The output file after running Tandem Repeat Finder (parameters: Match = 1, Mismatch = 1, Indel = 2, Probability of match = 80, Probability of indel = 5, Min score = 200, Max period = 750). The input sequences are from the draft genome of Solenopsis invicta (version H).
Download Si_gnH_w_mitovms_v3.fa.1.1.2.80.5.200.750.dat (62.97 Mb)
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Title output_TRF_Sgem
Downloaded 8 times
Description The output file after running Tandem Repeat Finder (parameters: Match = 1, Mismatch = 1, Indel = 2, Probability of match = 80, Probability of indel = 5, Min score = 200, Max period = 750). The input sequences are from the draft genome of Solenopsis geminata (unpublished data).
Download k127m3_20140618.contigs.fa.1.1.2.80.5.200.750.dat (29.13 Mb)
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Title Additional_file_1_monomer_sinv
Downloaded 15 times
Description Tandem repeat monomers extracted from the Solenopsis invicta genome using Tandem Repeat Finder.
Download l_monomer_fasta.txt (2.903 Mb)
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Title Additional_file_2_monomer_sgem
Downloaded 15 times
Description Tandem repeat monomers extracted from the Solenopsis geminata genome using Tandem Repeat Finder.
Download l_monomer_fasta.txt (1.550 Mb)
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Title Additional_file_3_censol_sinv_uniq_109
Downloaded 14 times
Description The unique set of 109bp CenSol repeat sequences in the S. invicta genome
Download Additional_file_3_censol_sinv_uniq_109.txt (1.255 Mb)
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Title Additional_file_4_censol_sgem_uniq_109
Downloaded 13 times
Description The unique set of 109bp CenSol repeat sequences in the S. geminata genome
Download Additional_file_4_censol_sgem_uniq_109.txt (649.6 Kb)
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Title Additional file 5_cloned CenSol repeats
Downloaded 7 times
Description CenSol repeat sequences cloned from the genome of Solenopsis invicta and Solenopsis geminata
Download Additional file 5.txt (11.77 Kb)
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When using this data, please cite the original publication:

Huang Y, Lee C, Kao C, Chang N, Lin C, Shoemaker D, Wang J (2016) Evolution of long centromeres in fire ants. BMC Evolutionary Biology 16: 189. http://dx.doi.org/10.1186/s12862-016-0760-7

Additionally, please cite the Dryad data package:

Huang Y, Lee C, Kao C, Chang N, Lin C, Shoemaker D, Wang J (2016) Data from: Evolution of long centromeres in fire ants. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8ff71
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