Data from: Model-based analysis supports interglacial refugia over long-dispersal events in the diversification of two South American cactus species

Perez M, Bonatelli IAS, Moraes E, Carstens BC

Date Published: February 9, 2016

DOI: http://dx.doi.org/10.5061/dryad.8h6k1

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Perezetal_2016_Pilosocereus_SSRdata
Downloaded 19 times
Description SSR data from populations of Pilosocereus aurisetus and P. machrisii species (Cactaceae)
Download Perez_etal_2016_Pilosocereus.xlsx (95.02 Kb)
Download README.txt (754 bytes)
Details View File Details
Title runms_Paur
Downloaded 35 times
Description A python script to draw values for the parameters tau, theta, ancient migration, current migration, bottleneck and population expansion. This file contains the 7 models tested in this study and outputs the ms' simulation results for both cpDNA and SSR markers in the species P. aurisetus.
Download runms_Paur.py (12.49 Kb)
Download README.txt (1.283 Kb)
Details View File Details
Title runms_Pmac
Downloaded 14 times
Description A python script to draw values for the parameters tau, theta, ancient migration, current migration, bottleneck and population expansion. This file contains the 7 models tested in this study and outputs the ms' simulation results for both cpDNA and SSR markers in the species P. machrisii.
Download runms_Pmac.py (12.71 Kb)
Download README.txt (1.283 Kb)
Details View File Details
Title runPPC_Paur
Downloaded 15 times
Description Retrieve parameter values from the parameter estimates of the selected in the P. aurisetus dataset and use them to simulate new data to perform PPC analysis.
Download runPPC_Paur.py (4.69 Kb)
Download README.txt (1.283 Kb)
Details View File Details
Title runPPC_Pmac
Downloaded 8 times
Description Retrieve parameter values from the parameter estimates of the selected in the P. machrisii dataset and use them to simulate new data to perform PPC analysis.
Download runPPC_Pmac.py (4.691 Kb)
Download README.txt (1.283 Kb)
Details View File Details
Title microsat2arp
Downloaded 27 times
Description A python script that converts the microsatellite data from ms' accessory program microsat to the arlequin format.
Download microsat2arp.py (9.011 Kb)
Download README.txt (1.283 Kb)
Details View File Details

When using this data, please cite the original publication:

Perez MF, Bonatelli IAS, Moraes EM, Carstens BC (2016) Model-based analysis supports interglacial refugia over long-dispersal events in the diversification of two South American cactus species. Heredity 116: 550-557. http://dx.doi.org/10.1038/hdy.2016.17

Additionally, please cite the Dryad data package:

Perez M, Bonatelli IAS, Moraes E, Carstens BC (2016) Data from: Model-based analysis supports interglacial refugia over long-dispersal events in the diversification of two South American cactus species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8h6k1
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: