Data from: Cryptic and pseudo-cryptic diversity in the world’s most common bark beetle – Hypothenemus eruditus

Kambestad M, Kirkendall LR, Knutsen IL, Jordal BH

Date Published: July 6, 2017

DOI: http://dx.doi.org/10.5061/dryad.8j5s7

 

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Title 28S minimum evolution matrix and tree
Downloaded 3 times
Description Minimum evolution analyses of Hypothenemus sp. specimens, using the molecular marker 28S. Sequence matrix and resulting tree. Analysis performed in Paup*. Analyses implemented evolutionary models (GTR+G+I) as suggested by MrModelTest.
Download Hypothenemus 28S minimum evolution (324.1 Kb)
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Title COI full dataset minimum evolution matrix and tree
Downloaded 5 times
Description Minimum evolution analyses of Hypothenemus sp. specimens, using the molecular marker COI (mtDNA). Sequence matrix and resulting tree. Analysis performed in Paup*. Analyses implemented evolutionary models (GTR+G+I) as suggested by MrModelTest.
Download Hypothenemus COI full dataset minimum evolution (1.765 Mb)
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Title COI reduced dataset minimum evolution analyses matrix and tree
Downloaded 3 times
Description Minimum evolution analyses of Hypothenemus sp. specimens, using the molecular marker COI. Subset of full dataset, using only specimens also sequenced for 28S. Sequence matrix and resulting tree. Analysis performed in Paup*. Analyses implemented evolutionary models (GTR+G+I) as suggested by MrModelTest.
Download Hypothenemus COI reduced dataset minimum evolution (104.8 Kb)
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Title Tree from parsimony analyses of combined COI and 28S data
Downloaded 2 times
Description Tree file for parsimony analyses of COI and 28S data combined. Matrix shows included OTUs (one specimen representing each OTU in analysis). Analyzed in PAUP*.
Download Hypothenemus COI and 28S combined parsimony tree (8.048 Kb)
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Title Tree from bayesian analyses of COI and 28S data combined
Downloaded 3 times
Description Tree file for bayesian analyses of COI and 28S data combined. Matrix shows included OTUs (one specimen representing each OTU in analysis). Analyzed in MrBayes Version 3.2, implementing evolutionary models (GTR+G+I) as suggested by MrModelTest.
Download Hypothenemus COI and 28S combined bayesian tree (6.91 Kb)
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When using this data, please cite the original publication:

Kambestad M, Kirkendall LR, Knutsen IL, Jordal BH (2017) Cryptic and pseudo-cryptic diversity in the world’s most common bark beetle—Hypothenemus eruditus. Organisms Diversity & Evolution, online in advance of print. http://dx.doi.org/10.1007/s13127-017-0334-6

Additionally, please cite the Dryad data package:

Kambestad M, Kirkendall LR, Knutsen IL, Jordal BH (2017) Data from: Cryptic and pseudo-cryptic diversity in the world’s most common bark beetle – Hypothenemus eruditus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8j5s7
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