Data from: Synthesis of phylogeny and taxonomy into a comprehensive tree of life

Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse IV HD, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA

Date Published: September 18, 2015

DOI: http://dx.doi.org/10.5061/dryad.8j60q

 

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Title Open Tree Taxonomy v 2.8
Downloaded 657 times
Description When unpacked, contains files for the Open Tree Taxonomy. Also contains a separate README with more information.
Download ott2.8.tgz (118.0 Mb)
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Title List of input phylogenies for synthetic tree
Downloaded 117 times
Description Ranked list of input phylogenies, including publication metadata, tree metadata, study ID, tree ID
Download list_of_input_trees.csv (133.7 Kb)
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Title Processed source trees
Downloaded 70 times
Description Input trees, post-processing, in newick format. Tip labels are Open Tree Taxonomy IDs.
Download Processed_sourcetree_newicks_v3.0.tgz (195.3 Kb)
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Title Input trees, decomposed into subproblems
Downloaded 67 times
Description Input trees, decomposed into subproblems, where the root of each subproblem is a taxon that is uncontested by the set of tree + taxonomy inputs.
Download subproblems-v3.tar.gz (1.621 Mb)
Download README.md (2.137 Kb)
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Title Open Tree of Life draft tree v. 3.0
Downloaded 424 times
Description The Open Tree of Life synthetic tree in newick format, with tip labels as Open Tree Taxonomy IDs.
Download draftversion3.tre.gz (22.76 Mb)
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When using this data, please cite the original publication:

Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse IV HD, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA (2015) Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America 112(41): 12764–12769. http://dx.doi.org/10.1073/pnas.1423041112

Additionally, please cite the Dryad data package:

Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse IV HD, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA (2015) Data from: Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8j60q
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