Data from: Replicated landscape genetic and network analyses reveal wide variation in functional connectivity for American pikas

Castillo JA, Epps CW, Jeffress MR, Ray C, Rodhouse TJ, Schwalm D

Date Published: April 5, 2016

DOI: http://dx.doi.org/10.5061/dryad.8j65p

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Genetic Distance Matrices
Downloaded 4 times
Description One .csv file per study site including the genetic distances among individual pika samples. Genetic distances were calculated from individual genotypes as a principal conponents distance calculated using the ecodist package in R.
Download Castillo_Genetic_Distance_Matrices.zip (584.5 Kb)
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Title Pika Habitat Patch Centroids
Description One .csv file per study site including the xy coordinates (UTM, NAD83) for each pika habitat patch used in network analyses. Patch IDs correspond to Patch IDs in Patch Distance Matrices files. Centroids calculated in ArcGIS10.0.
Download Castillo_Patch_Centroids.zip (69.71 Kb)
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Title Pika Habitat Patch Distances
Downloaded 3 times
Description One .csv file per study site as a 3-column matrix including resistance distances and Euclidean distances among pika habitat patches. Resistance distance was calculated from the perimeter of each patch (polygon) using an overlapping tile approach with the program Circuitscape. Patch IDs correspond to Patch IDs in the Habitat Patch Centroid files. Resistance distance was not calculated between habitat patches separated by >10km.
Download Castillo_Patch_Distance_Matrices.zip (39.09 Mb)
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Title Pika Genetic Sample Localities
Downloaded 2 times
Description One .csv file including the xy coordinates (UTM, NAD83) for each pika genetic sample used in analyses. Data was collected in the field on handheld GPS units.
Download Castillo_Sample_Localities.csv (23.96 Kb)
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Title Landscape Resistance Surface Raster Files
Downloaded 3 times
Description Final landscape resistance surfaces for each study site.
Download Castillo_Ressitance_Rasters.zip (154.1 Mb)
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When using this data, please cite the original publication:

Castillo JA, Epps CW, Jeffress MR, Ray C, Rodhouse TJ, Schwalm D (2016) Replicated landscape genetic and network analyses reveal wide variation in functional connectivity for American pikas. Ecological Applications 26(6): 1660–1676. http://dx.doi.org/10.1890/15-1452.1

Additionally, please cite the Dryad data package:

Castillo JA, Epps CW, Jeffress MR, Ray C, Rodhouse TJ, Schwalm D (2016) Data from: Replicated landscape genetic and network analyses reveal wide variation in functional connectivity for American pikas. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.8j65p
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